Scaffold Ga0244775_10031568

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10031568
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4717
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (68.75%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013755	Metagenome / Metatranscriptome	268	Y
F029732	Metagenome / Metatranscriptome	187	Y
F039136	Metagenome	164	N
F058715	Metagenome	134	N
F059002	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1003156811	F013755	GAGG	VSDTPISDSTPHNVADLAMLCRRLERLAAVRLGYIDQLEAENDALRADLLLWREAKP
Ga0244775_1003156812	F058715	GGAGG	VSLLEKLGLSKQSMEKMLGVAAPLKITKKKSYRRYETVPADIRKAILGEHPSYTCRELAKKYRISSSTIWDIRDSKSKIE
Ga0244775_1003156814	F059002	N/A	MNILNEIKNGISRLLGVHKKVETKETPRTLKSKRIQKRGRGRPKGLRIPREIVDAVLQADKSITNKQLAAKYRVSYFWVWSVRSKKLRLKR
Ga0244775_1003156815	F029732	AGG	MKYVSKTKPTVEVEFVSEAQLRIGETKRLCVIYQRGEIFYVRPKAEFFDKFVLDEPQIQP
Ga0244775_100315682	F039136	N/A	MTIEIKYTASVYTPAGWRGVTITAKATKTSEKMALVVEVLEINGKSPKSDMSRTGASRQRFNGRGISCREVGAKKRLSACEILN