Scaffold Ga0244775

Basic Information
Taxon OID	3300024346 Open in IMG/M
Scaffold ID	Ga0244775_10031008 Open in IMG/M
Source Dataset Name	Whole water sample coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024346 Open in IMG/M

Scaffold ID

Ga0244775_10031008 Open in IMG/M

Source Dataset Name

Whole water sample coassembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4760
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (83.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4760

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (83.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	USA: Columbia River Estuary
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Columbia River Estuary

Coordinates

Lat. (^o)

46.234

Long. (^o)

-123.9135

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001125	Metagenome / Metatranscriptome	769	Y
F003422	Metagenome / Metatranscriptome	487	Y
F023344	Metagenome / Metatranscriptome	210	Y
F047059	Metagenome / Metatranscriptome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1003100812	F047059	GGA	MKIHLISLNQDLEDARNNVPLNEDEYFESDAYYTGAIDTMEHILSVASDIMIDNERVY
Ga0244775_100310083	F003422	N/A	MTNELVSSKYTFVCDPDECDCLIELTSSDGFGFPSGVTQLTCPCGRKTTLVSVEHATITSLNQTKEGNAMDGMTTENLPLSDSEKYNPDQLVTYKVISGYSDATYATDKVRNIEWELHNARTNSKAVSSLQNKISLVKDIISEAYADSQDQETLQAIAEALEIELVREIEWSASIEVSGVITVNLLEDTHFDLDSEIEDALYADSHNGNIEVVDQEICNIRENC
Ga0244775_100310084	F000311	AGG	MERAYWDAEINGLDPQRMAPLTFNIGTGSIEKVSRLRDKYNLTESYISDYETTGY
Ga0244775_100310085	F001043	AGGAG	VSDYKDGWADGYKFARDEIMEKLSEIDINDIDSWILDRLSEMIEGGKL
Ga0244775_100310087	F001125	GGCGG	MGDRANFGFKDQKGDTLFLYGHWAGYDMLAKLANAVQAAEPRWQDPSYATRIAISHLIGEDWNQTLSWGIYINQLGDNEHKVPVINWAQQTFTLYEEDLSTVVFTSSLAAFVDKYSRLIM
Ga0244775_100310089	F023344	AGGCGG	MEAFTDTVGEHLLGAIQVDIEQALFEDWNNANLEEGEAFAEWRFMQFAPDNLKQSYNEYYGYIEGDEYCL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0244775_10031008

Overview

Ecosystem & Geography

Associated Families

Sequences