Scaffold Ga0244775_10030786

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10030786
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4781
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039635	Metagenome / Metatranscriptome	163	N
F043397	Metagenome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100307861	F043397	AGGAG	MPRYDVYIPFTCSYEGEIADEEFSTIVKADNEKDAIQEAFKELESEYVIKTVNSDDITVEQIPDFPSFDEWEEKYTALKNPHAYEGEQGLGEIMFDTDGDQYQTVRGFDSGKIWTVRSTEYGLMLTAGFGVVDRFGYILSEEPATEEDKEQAFIID
Ga0244775_100307862	F039635	AGGA	MTEAQAEKIKDRVDELNKLYPIKLRYQMLHTSVLNCAVTITYNYTENEWMTFAGLGFNYNQILDKLSGFQFGIEAVEAYQEEHGNLKFSHSDLPLG