Scaffold Ga0244775_10030218

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10030218
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4829
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002092	Metagenome / Metatranscriptome	594	Y
F015729	Metagenome / Metatranscriptome	252	Y
F018537	Metagenome	234	Y
F018924	Metagenome	232	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1003021810	F002092	N/A	MRTTNQKAIDYLNGNPIVANFINKVNIQRKDHYVKADMVSQWKELIVEVGQKYIRLWVGTSCWGFISRVDGDLKGSPIKKGDLLKAATWKAPAKHARGNIIDGTARYSTYGPEYL
Ga0244775_100302182	F015729	N/A	MKRPVNFETIDRIDFEIHGHNFHTDLDQLQNKEKSNWVWVFPNGGILGDYVVLFELKWEHDCYSMKRCVLGEGNTGNYIFQDNWLRRDIIKSKDEFINHIQATIALEMGRGTFQN
Ga0244775_100302187	F018924	N/A	MTNSEKAIAQLFGVLCSIIKSEQTPQMTKQATINTFQHLIGDETSPFMTDELIRLSTAMDEEMQSIVRQLNGDRVLNEVLTNNINLN
Ga0244775_100302188	F018537	N/A	MAANRTSNYIATIPMKNEEQVLEVKKVLEQIFGWVTLRGRHSDRKSVVKSWGKSRQNDVPWRVAQYIDIYLHGENPNRQRISQKKGMERKNLSMSDNNVIIARTLGSMGYSLADGVKHTKQSRPSSPLMAIKELQYQTQMKDPKFQRKEMKRKYMNKSYKLQKGDWGYIAQELLDYTYLCNRVSFSQLKSHYDIVMRGNATTQNGGSFIHHLHSLISATNALGRRCGRYLYKDTDGKYKVSNI