Scaffold Ga0244775_10029526

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10029526
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4893
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001588	Metagenome / Metatranscriptome	667	Y
F024299	Metagenome / Metatranscriptome	206	Y
F050682	Metagenome / Metatranscriptome	145	N
F073416	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100295261	F073416	N/A	MGEVMNDELQLIDRLEGIRRILHTNTDLADVILLGMIEEA
Ga0244775_100295267	F001588	GAGG	MQNTTTKTNNVFLNAADAAIVVTVNNVQVAAVYTADALVKVFLQHNINVNTDTIMCSSSIDFAEEEGFASDASAHNIIDEAFEVLS
Ga0244775_100295268	F024299	GGAGG	MQNTNNTKIKTVTTFENADNSVQLDIDLTAAAYTVNGRKVESITLYADADCYGDLAVNWEAEEDSNYVHNTSMLMRDTNDSTNNTATMGEFYWEHAFDNTLHSILSEYGFSAQAVADVCTSEWGMQDVGRASYDANCIAEEMLAAHNVVFETA
Ga0244775_100295269	F050682	N/A	LCASVIIVYKLKKGYNMQNTKYTNTVIATIENFAALIQNAAHDSVVEKNDYSILDNVQALQYVYANYAQHTSVASLASAALSSNLDTVVRENIHAQLTFIN