Scaffold Ga0244775_10028486

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10028486
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4988
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003691	Metagenome / Metatranscriptome	473	Y
F005299	Metagenome / Metatranscriptome	405	Y
F008359	Metagenome / Metatranscriptome	334	Y
F017485	Metagenome	240	Y
F077291	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1002848610	F005299	N/A	MNNNIPTTLQNPIDTPNEIWENKVGYDSINKRMIAKVYKHLYNVMTLTTKPSWTAIIREMLIEDNKLGKVSLNGYYSTIRKNLKDIEVIKYNGRKGLSKGKNWDRFFGDEDWSWFITNTNSGGYGTIVK
Ga0244775_100284863	F017485	N/A	MNRLNKKDILEGVTFILMVVGIIGLMCVLYEVNELKGLSKGASNFRSITTTK
Ga0244775_100284866	F003691	N/A	MYWVERMTYHIKKKVYMNSRMTNEFNQFTEVSYNTSRNERPIYKNFAASKMSQSIKPNSIVEFTDFMGRKHKVAVRNNTELKKQMKFFGMLKKESSTIKQIISQYPIKLGKVEKRFLAECKRELKSVLKLTNKQLEIVLG
Ga0244775_100284867	F008359	N/A	MSKSKVNVKSNYDIKKVKRVMRMKSENFEPATFEVFKVTGPNKFKKYFVSRKDAKSYIDKMTDTKMTLGIVKNIMNEIKLK
Ga0244775_100284868	F077291	N/A	MYNENEITLTMTKKQLKSVVSLMGIALETDCKPMNDLSNKKLENLSILYKVLKDMSKQSK