Scaffold Ga0244775_10025731

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10025731
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5280
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040104	Metagenome / Metatranscriptome	162	Y
F074883	Metagenome	119	Y
F077305	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1002573110	F040104	AGGA	MSKYTIDLSYEITDQIVVDQLRDTWERLKLDIGANNHVFVWGDQEADDAEIQKHIDALEIVLKWYSTPDQLIEMGLKDDA
Ga0244775_1002573112	F077305	GAGG	MEQNKVYTIKLMSGEELIARVKQEDGVTELLKPRTVGMGPQGFAMMPWMMSAPDNNVVISDTVIVGATETSQQVATQYLKQVTGIQV
Ga0244775_100257313	F074883	GGAG	MVNYKIVNEHTISVTNNYVERGGDILEIKTDQIIKRNLGFNKAKELVRHLNFGGGFDGSTPAFFLAEREKTLELTVELV