Scaffold Ga0244775_10024803

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10024803
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5392
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006740	Metagenome	365	Y
F016392	Metagenome	247	Y
F053891	Metagenome	140	Y
F085598	Metagenome	111	N
F090372	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1002480314	F016392	N/A	MTTAFDYKGASIWTRDTKMRRLKQGEEFAKRKQDGRDINEKNQVFIYSKALSRKTK
Ga0244775_100248032	F085598	GGAGG	MSVRLNNWKTQLKAEKSIQKIYQRDFNAAWRKLSKSMTLVKKLEDKVANHLAKIKQ
Ga0244775_100248036	F090372	GGAGG	MIDRLILSAVLGTVGWHGLNPEPMTLQAKAKYKSVSAVCAKKKKTVKVKELCKKWEQHDA
Ga0244775_100248038	F053891	GGAG	MPRPKTELTKSGRAIGVRLTESEYQQWLKLGAAKWLRKLLQEKRDASV
Ga0244775_100248039	F006740	AGGAG	MPAFETWERETLVKFAQESYKKLQEQHDQIQQLQNDVKDAIKAYREVMK