Scaffold Ga0244775_10022584

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10022584
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5692
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001781	Metagenome / Metatranscriptome	635	Y
F007691	Metagenome / Metatranscriptome	346	Y
F015600	Metagenome / Metatranscriptome	253	Y
F035304	Metagenome / Metatranscriptome	172	Y
F093851	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1002258410	F035304	N/A	MDLNTFREYIRLHAISLEQDLQNEDGADSIVPYLEGAIHVSKHYLEVLNG
Ga0244775_1002258411	F015600	GGAGG	MDNLKLEPHLQRMVDAGVSGTDILHGELKNLMLMAEQQFTEIATQEEEEDYSDAMLSMERTEAQGRLDAFGEVYALTYALSFAIADRIKLTN
Ga0244775_1002258413	F001781	AGG	MKPEDKDKLNTCLDILDTTDLGLSLVWLWTWSTINNILEDETLKAKVTKDQMWDNLCEAVAAGQGFSLEYGAEQHHEEVQDWMLSRDYIIDTMFEEEDDDE
Ga0244775_100225845	F007691	N/A	MNTINDLINEIYDDNFSHLEFEENMGGTDCDCHIHITLNTIAKYAGIEVG
Ga0244775_100225847	F093851	AGAAGG	MAILGYEVSDVDDMIYALDSVLTTINSDDDPWLYNNTWRAKELLQGLQVEGYFD