Scaffold Ga0244775

Basic Information
Taxon OID	3300024346 Open in IMG/M
Scaffold ID	Ga0244775_10022570 Open in IMG/M
Source Dataset Name	Whole water sample coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024346 Open in IMG/M

Scaffold ID

Ga0244775_10022570 Open in IMG/M

Source Dataset Name

Whole water sample coassembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5694
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (88.24%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

5694

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (88.24%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	USA: Columbia River Estuary
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Columbia River Estuary

Coordinates

Lat. (^o)

46.234

Long. (^o)

-123.9135

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000311	Metagenome / Metatranscriptome	1326	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000714	Metagenome / Metatranscriptome	924	Y
F000852	Metagenome / Metatranscriptome	860	Y
F001043	Metagenome / Metatranscriptome	794	Y
F007468	Metagenome / Metatranscriptome	350	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1002257013	F001043	AGGAG	LSDYKEGFQDGYKFAREELMEKLREIDIRDIDSWLLNQLADMIEGNDL
Ga0244775_1002257014	F000311	GGAG	MYFELTAPTKVAFAKAIWEAEIIGLDPEKMDALTFNIGTGSIEKVTNLCEKYNLTEEFVSEFEPTGYTRS
Ga0244775_1002257015	F000714	GAGG	MEETTVGTINDLLTPYQPDMLVTYKKISGYSDTEFLTDKVRNIEWELHNARTNSKIASALTNRISLVKDIIVEAYSDSDDQETLRSIAEALEIELTRDVEWSATIEVSGVIQLDLLADSDTDIESEIYDNLYVESQHGNIEITDTEVTNVREN
Ga0244775_100225702	F000852	GGA	MTTKREYLKQQGITVGARGRFSGAAKVALQEAVAKGLTFTAEPVKKAK
Ga0244775_100225703	F000441	GAGG	MKMSDRYVNDQLNKAQKLLWGGSETENIEAHNMIVQLIKDREDLIENS
Ga0244775_100225705	F000263	AGG	MNNEDIGLPPHLQRLVNSGVSGLDIMHGELKNLMLMAEQELADAIEREEESEEAMDSMVRTECEGALDTLVALYELTYQLSFAIGARNEA
Ga0244775_100225706	F007468	AGAAGG	MTKSSHFLEYMKIHLISLNQDLEGDYNVQSKINIQGQIMATEHLLSVATDIMNSTNERYNNE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0244775_10022570

Overview

Ecosystem & Geography

Associated Families

Sequences