NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10021727

Scaffold Ga0244775_10021727


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10021727 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5832
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001725Metagenome / Metatranscriptome645Y
F009745Metagenome / Metatranscriptome313Y
F029754Metagenome / Metatranscriptome187N
F083898Metagenome112N

Sequences

Protein IDFamilyRBSSequence
Ga0244775_100217271F029754N/AMSCNTVTFKRGTNFGSSTVFTPEAPPAIQSLSGVTVTSTIVDADRNEYDLTVTVAGNGLSFTADYVGSTADWAIGTARWDIKFTQGTTIFYSDTMRLDIIGQVTV
Ga0244775_100217273F083898N/AMTTQPGNGYNFVSSSQGTSLEINQPWTPPIGDALVFAPEFVLGNSSLPEQLVYGDGTGGRPLPFQCQVVSINGQRFLQIGVGAIGYTAGPMPIIKSGADTRIMQAFANKLQICPSGTRNNGDLYPIYPPDDPSYSLTWWMEDGGGYELSDTNDPVTLWAFKWDVDVGVAPFSSSSVVNTGLPTLALIATSNSTDTNKVTVDPGPSIFVQTMNVEKMTGYDHASTGLPLDWGHCHTSWLNPRKLGYSYKAIATVTPSANTFTMTGGQERAGIPLVQNQVQHISLIGKASGGTALISCGASTSTVPFPVTDFWDPVTPIYSDELTLAACLNSIPAITFTVGGEPVSIAFAGNVEVSRTTEGSYYVTFCNELAGLNAPLLTFNTSGVTAYTYDFDITQYHTGNIDLTTPMQTGMVQLRNVPGEDEADDPYNLNLAASWDQIVNKAECVACTGFTGDVTTDGMFNMTGATIIPVDYDGGECINEPTATHPYKVIYVSSAGGNDTFSIVTGTTNNVTPGNIASTITVAAGSYDVWIRHPYASGVFPDATNFEWNIGATIPADTDTYGYVLIATISSSTVTQLVTGSLWSSRLKMGTDTARYYYAR
Ga0244775_100217277F001725GAGMAAISNGTTCIYGIANGTFGNLFVQSYSLSSSFNAEATVVDETGLTKTHRLDDRKSELSVEGIAKTSSIPVLGAALTFTLNTNSAYPGGSASASFVGTITKVDDKGSNKGFTTVSITAIDYEGITPA
Ga0244775_100217278F009745N/ASCSVRITLFSNADDTTLADHRARCAALSGNMRDLVSIKAAFTATGDASCYDVTMQSEDEGIDERSWATSFTFDILTVFPA

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