Scaffold Ga0244775

Basic Information
Taxon OID	3300024346 Open in IMG/M
Scaffold ID	Ga0244775_10021727 Open in IMG/M
Source Dataset Name	Whole water sample coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024346 Open in IMG/M

Scaffold ID

Ga0244775_10021727 Open in IMG/M

Source Dataset Name

Whole water sample coassembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5832
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (37.50%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

5832

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (37.50%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	USA: Columbia River Estuary
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Columbia River Estuary

Coordinates

Lat. (^o)

46.234

Long. (^o)

-123.9135

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001725	Metagenome / Metatranscriptome	645	Y
F009745	Metagenome / Metatranscriptome	313	Y
F029754	Metagenome / Metatranscriptome	187	N
F083898	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100217271	F029754	N/A	MSCNTVTFKRGTNFGSSTVFTPEAPPAIQSLSGVTVTSTIVDADRNEYDLTVTVAGNGLSFTADYVGSTADWAIGTARWDIKFTQGTTIFYSDTMRLDIIGQVTV
Ga0244775_100217273	F083898	N/A	MTTQPGNGYNFVSSSQGTSLEINQPWTPPIGDALVFAPEFVLGNSSLPEQLVYGDGTGGRPLPFQCQVVSINGQRFLQIGVGAIGYTAGPMPIIKSGADTRIMQAFANKLQICPSGTRNNGDLYPIYPPDDPSYSLTWWMEDGGGYELSDTNDPVTLWAFKWDVDVGVAPFSSSSVVNTGLPTLALIATSNSTDTNKVTVDPGPSIFVQTMNVEKMTGYDHASTGLPLDWGHCHTSWLNPRKLGYSYKAIATVTPSANTFTMTGGQERAGIPLVQNQVQHISLIGKASGGTALISCGASTSTVPFPVTDFWDPVTPIYSDELTLAACLNSIPAITFTVGGEPVSIAFAGNVEVSRTTEGSYYVTFCNELAGLNAPLLTFNTSGVTAYTYDFDITQYHTGNIDLTTPMQTGMVQLRNVPGEDEADDPYNLNLAASWDQIVNKAECVACTGFTGDVTTDGMFNMTGATIIPVDYDGGECINEPTATHPYKVIYVSSAGGNDTFSIVTGTTNNVTPGNIASTITVAAGSYDVWIRHPYASGVFPDATNFEWNIGATIPADTDTYGYVLIATISSSTVTQLVTGSLWSSRLKMGTDTARYYYAR
Ga0244775_100217277	F001725	GAG	MAAISNGTTCIYGIANGTFGNLFVQSYSLSSSFNAEATVVDETGLTKTHRLDDRKSELSVEGIAKTSSIPVLGAALTFTLNTNSAYPGGSASASFVGTITKVDDKGSNKGFTTVSITAIDYEGITPA
Ga0244775_100217278	F009745	N/A	SCSVRITLFSNADDTTLADHRARCAALSGNMRDLVSIKAAFTATGDASCYDVTMQSEDEGIDERSWATSFTFDILTVFPA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0244775_10021727

Overview

Ecosystem & Geography

Associated Families

Sequences