Scaffold Ga0244775_10021342

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10021342
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5893
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010619	Metagenome / Metatranscriptome	301	Y
F011151	Metagenome / Metatranscriptome	294	Y
F022413	Metagenome / Metatranscriptome	214	N
F043225	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1002134211	F043225	AGGA	MNIDLINAELQTVAFMQQEEQIDLTYQEFLDTINAYHDMMMYESQSYDLDAFYYGEN
Ga0244775_1002134214	F022413	AGGA	MLLAKPKLTNTLDSKQFKSFAECQEYLEAYTDISMSLVEWIALGKILVAETMTTPEFYPKKVKGQIVMTKFDIEEFM
Ga0244775_1002134215	F011151	GGAG	MTGFQSKRKMAEDRFKVYCEWCHDWHYTDEVDILNVEEDIEGRDVAHFECGQPPSWNEDISRYDGTSSLVYKE
Ga0244775_100213425	F010619	GGAG	MEDPVDFENSHPCMEKIIESDKLLPVTKSVAKMLMRNPYTSLGKFFKKLSDENLQTLMEIIDEGDSEFNDGMEDIVLMTEMLSRAEGVPSQCIEDITENVNYFGACITCVSLARKGLVRVYYDNMSFGTDQGDKVLVEKID