Scaffold Ga0244775_10019649

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10019649
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6183
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (25.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006935	Metagenome	361	Y
F012978	Metagenome / Metatranscriptome	275	Y
F013085	Metagenome	274	Y
F017132	Metagenome	242	Y
F041601	Metagenome / Metatranscriptome	159	Y
F062761	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100196491	F013085	N/A	DEMVNSLEEDGFFEEHQFIDRIPLKRALQIAMQRKWEQEDDMILTDKQFLEVCQNVSNNGIAKTIEDLIDKGALNMSVNEDGEILYSSNKDFKWNEDEIQ
Ga0244775_1001964910	F017132	N/A	MIRKLETAKVGEDLYEIVKRLPISKFITEPTGDKADTLKKYYGVEKILKFHQTQEYLFVNLIEELEIL
Ga0244775_1001964913	F006935	N/A	MNKSYAKQIIGWAEEAKEYLTIRKEIILDDDTTDEQLGMIIRMMYRAKVETQNETILKTKENAGL
Ga0244775_100196492	F012978	GGA	MKFNKTDDELKHMTDEELFEYLDAKAAHLKQYTSPLSSYKTKKFASIGAAISNTEFDYDSVKQIAKENEQKGYEKFIKDKNKNNE
Ga0244775_100196494	F062761	N/A	MGFNHCYLTSVEDLQRYLDNVGLEKFIKTYRSYDALTGPSECFKFLEDKIEENEKVISDINIGDVEL
Ga0244775_100196498	F041601	N/A	MKQQILKLVNQIKEDLKVIDKDGVTHPLIDNVYETLELIEDEIYEDDAQADALSFEDEDY