Scaffold Ga0244775_10016581

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10016581
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6807
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003332	Metagenome	493	Y
F013413	Metagenome	271	N
F024785	Metagenome	204	Y
F055728	Metagenome	138	Y
F093869	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1001658112	F003332	AGG	MAGTAVVQSGDYELEIDTGFIQDGFTLDSPTMGLLDNTEFVLDGTTNFATVLGGCGNVTIKRGRQDIGDQFSAGTMSFVMLDTTGLFNPFNEDSPYWDSTTEQPGLAPMRKVRFSRYDTNDVKQYLFKGFIVNYDYNFALGGIDTVTVYCSDDFYLLSQTYMAEFNVSEQLSSARITAVLDLPEVAFPIAQRAISTGTQTLGGSAAFTVENGTSVQAYLAQINQAEQGRLFMSRNGNLTFQPRIGNTISGSVADFHDDGTNIPYSNVGISFQADQVCNRASVTIAGSNTPQVANDLASQAVYFIQTQSITGSLLHSNGAAATLADYLLVGEPEARYTSVETAFMSLTNAQRDQVAIIDIGQTITIEHSFTTGATTSELAQELAIEGVEHTISLSQGHSITLFTSPTVIVYELILDDAVYGILNAGNVLG
Ga0244775_100165814	F055728	AGGA	MRRSYDPHYGSREQLRDSAEHGMKVARERDALKKENELNIAALKASIRVQAEYLDEITELKAIIKYMTEGE
Ga0244775_100165816	F013413	GGA	MTENEYEETFDLRMEKEHQETLRRMQEFRLIGEQISKMPDTPPKVLEIEVRYLMGIISELETRIKDLESEVRRFELLVTRGN
Ga0244775_100165818	F024785	N/A	MKPYTINAAPVVAKPLAGMNLWVTRAVYHSDKSCWNNGSWVVRDVRGKPGIVSNHAKGVACDISYRWLSATNKGRQDGRKVSLAYMNKLLENADTLGIELVIDYALNRSWRCDRATWKAGTFEPGDWWHVEVNPVIAHSEELAKQAWDKVFGLIPAVIKKPV
Ga0244775_100165819	F093869	AGGA	MSLRTGAKLENEALHARLVFTVGVIMAVTFMIMVVGLLFGMLFVNMPAELSPLDGSIVDLLSTISVFLTGALSGLVASNGIKKNQKTETE