Scaffold Ga0244775_10016343

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10016343
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6866
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030877	Metagenome	184	N
F032042	Metagenome	181	N
F040865	Metagenome / Metatranscriptome	161	N
F094414	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100163431	F094414	N/A	WVSYAHPFLLGEIMSNLPENGPFKGATEATTDDVVRQELVTYKKRDGYFVRQTTVRVFDSVDYIDNTTTVVLFKL
Ga0244775_1001634318	F032042	AGGAG	MNKLYFSIGDSVMSRWGEAKIVRMDITSFGEPKYGDSVSNVPIDYNGPWIVDLDNGHWAYGSQISLIQGHNEYA
Ga0244775_100163436	F030877	GAGG	MKKLLLAVSVFVLASCTASISIKAQEFNGDPGAQPLADAKPLSPNKDKDVPIYPDTVQKTTMGCSMLHKFTDVREKWGERPLFSGIGLQLVIPPNVYGAPAKPIKRPMTLFVNQDTGTWTLVSFWTDNYACLVANGRDFVPGGSSFSDEGNL
Ga0244775_100163438	F040865	GGAGG	MYYNLDIVAIDGPVFSGSFKSIYPMAEKIVRHLGTSFDVGSSYAVSQDGVCTAMIAGCTWTDILEAIRDTESQEESNNARASYEYWGRAIGDIDADGEPAF