Scaffold Ga0244775_10016246

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10016246
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6890
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (15.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013759	Metagenome / Metatranscriptome	268	Y
F014137	Metagenome / Metatranscriptome	265	Y
F017826	Metagenome / Metatranscriptome	238	Y
F022884	Metagenome / Metatranscriptome	212	Y
F103248	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1001624618	F014137	N/A	MLTIKNIQTIIGETYNEVFNVIGVKEHKHHYEFTLGYATVGKPNYETILLHRKQTDNGMYVMEYNSKTLWLNTNEFDTIDKIIICMQTI
Ga0244775_1001624619	F103248	N/A	MLTIKNLDKIKHIGSTNWYISAVAEYEDLYGFAVLMGNMQDTFYLNRECRYMRMQNNEPVYRLYKNFDQSKINRWLSLHEITPYFINQAIDKMLNE
Ga0244775_1001624620	F022884	N/A	MLTINNLDKIVRYPIGYTFRVKSMVCGHTNYHISLIDGKGGCRDLKLNRIKGRRGLYKLSYGNYLLHLKFSDIHNLDFFCTQITQLIIFHVNN
Ga0244775_100162466	F013759	N/A	MKVEFGMSVFSKRETLLGLEITTHNGIVASEDALYDQRIVEFSIGIIFAIFTIGFVSKGQKIETPDMDNVQRAMKAFESEMDK
Ga0244775_100162467	F017826	N/A	MERLKRIWNVVLVPMAFFLGAMNMWIGETAVGCMFILFATNETINKQ