Basic Information | |
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Taxon OID | 3300024346 Open in IMG/M |
Scaffold ID | Ga0244775_10014247 Open in IMG/M |
Source Dataset Name | Whole water sample coassembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7424 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (78.57%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Columbia River Estuary | |||||||
Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F026266 | Metagenome | 198 | Y |
F045754 | Metagenome / Metatranscriptome | 152 | N |
F049625 | Metagenome | 146 | Y |
F073554 | Metagenome / Metatranscriptome | 120 | N |
Protein ID | Family | RBS | Sequence |
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Ga0244775_1001424710 | F049625 | AGGA | MLSDIDLKDWIEQPSIPLYDVPKETPVKTPNGMLWFSHIDGMYSLSYDANGTPVHMKAWVKVNPYRKKQTP |
Ga0244775_1001424712 | F073554 | AGGA | MSIEMMSDDDLDMVQYECWYWSVIDSMAELVMNNGRDKVMSHVAEAVLNKAHSGHVAAQEDPFAW |
Ga0244775_1001424713 | F045754 | N/A | MTIDDNKPWPFPSHFGDAHEDDDKLKADCLALLQDFTAFQLRGEIYYGYLDVKALKVIEELRKDRDNETKPST |
Ga0244775_100142478 | F026266 | AGGA | MTIDTITFHFVGELEDSGAIVDVQCQIDEDGDCRELDSAIYKGIDVLEVISHDQWENLKWEASKKYKAEHDEQLTIDHDNKSPLKALYGLLKPSFNIR |
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