Scaffold Ga0244775_10014247

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10014247
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7424
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026266	Metagenome	198	Y
F045754	Metagenome / Metatranscriptome	152	N
F049625	Metagenome	146	Y
F073554	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1001424710	F049625	AGGA	MLSDIDLKDWIEQPSIPLYDVPKETPVKTPNGMLWFSHIDGMYSLSYDANGTPVHMKAWVKVNPYRKKQTP
Ga0244775_1001424712	F073554	AGGA	MSIEMMSDDDLDMVQYECWYWSVIDSMAELVMNNGRDKVMSHVAEAVLNKAHSGHVAAQEDPFAW
Ga0244775_1001424713	F045754	N/A	MTIDDNKPWPFPSHFGDAHEDDDKLKADCLALLQDFTAFQLRGEIYYGYLDVKALKVIEELRKDRDNETKPST
Ga0244775_100142478	F026266	AGGA	MTIDTITFHFVGELEDSGAIVDVQCQIDEDGDCRELDSAIYKGIDVLEVISHDQWENLKWEASKKYKAEHDEQLTIDHDNKSPLKALYGLLKPSFNIR