Scaffold Ga0244775_10013533

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10013533
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7635
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (9.09%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (13.33%)
• Associated Families: 15

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003291	Metagenome / Metatranscriptome	495	Y
F003542	Metagenome / Metatranscriptome	480	Y
F007113	Metagenome / Metatranscriptome	357	Y
F007690	Metagenome	346	Y
F017998	Metagenome	237	Y
F018001	Metagenome	237	Y
F019478	Metagenome	229	Y
F024306	Metagenome	206	Y
F024555	Metagenome / Metatranscriptome	205	Y
F031098	Metagenome / Metatranscriptome	183	N
F036239	Metagenome / Metatranscriptome	170	Y
F037728	Metagenome	167	Y
F038234	Metagenome	166	Y
F053288	Metagenome	141	N
F062757	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100135331	F053288	N/A	MITIKNYNSDVGHGTFYGWDMKYALEDKDFYSFEFEHRNEQKRVYVLVHRNSKNRTKHVVSEDLHEVYIQDMVGDAWRRTLNLTKPQLHKSAFYNWVESVIDDEYGLPF
Ga0244775_1001353311	F062757	N/A	MLHIQNIRKLGGRRLFGGWIITAVGGNPNEPHYLLDIHCNGPIGNRIDGCSISLNRRGEIQRTLGRPVELAYFLYYNGERTDVCVTKDWILNPENFISQLKYIINEYHNKR
Ga0244775_1001353312	F038234	N/A	MLRIKNIESLKGTYVGHWKIHYVAKLQNSYLIKVVHNGSPFDMFNLMIGRVKTSNGDYLMYCQETDNRHYLPIESIRNSYTFIRFLIDELI
Ga0244775_1001353313	F017998	N/A	MNLERLDLEKYEVLERERNNTIADPLYQQWMSELKVSSSYSDREGIIRANDLNNQYTYSVLAGNKSTKFSVSSILSVLK
Ga0244775_1001353314	F037728	GGA	MKRLNITNFSKRVMEIHSDFFMIKHCSDRGDKYLMGIDTNDVVSFKPITIPKHYKMAIDKVCREDGSYHIWLWDMEANVSYPMSIERDELSNSSTFTSFLNHMLKLANEGSFSGDKGNRIDNK
Ga0244775_1001353315	F031098	N/A	MKTYYDIHILSYSGDSLFIKGVSYSMMMKIANDNPNCQKIDILKEYSKRISKY
Ga0244775_1001353316	F003542	N/A	MSKSNFDYDLFDEKIGWDSQNKKYLIRVYEYLVDSMDNNPAPTWVGIMRKMLGSNPKDVNPSSYYSSVRRCLKEIGVCYFDTTKRCMVKGKNWDRFVSDENWNWFIMRTGSCEYSTIIK
Ga0244775_1001353319	F007113	N/A	MKLNLTPEELKTVEIALNELFNSDTWTSGRKEADIDKIANRAQYLLHVIESYNKNNKK
Ga0244775_100135332	F036239	N/A	MKIKGWEKISGFTYKGYCIVNPIHDANEEGYFATVLNFNQVYRPKWDITLSAYAVKGVVTFSILDNVTQHLLAKSHLTKTNIDTLQKFREQYEMLVDDILEEAQSYVKKATTNINGGTTGIINQVQSTGTNVLYGSSSLSTNTPAHLIQTLQTLQQQIDDYNKKLQ
Ga0244775_1001353321	F003291	N/A	MNTKQMNEKLVSVFTQDELAALMTAMAGYVNVKRKQGRSTGIECVVFNKVTDALLLSNYLNAEVIDTKPNSNAPMGSAAYKAYEAMYESDVRAHS
Ga0244775_1001353322	F024306	N/A	FMGKQHRIVCNNRRKLAEANEFLKMFKTESVAINKILSEYPVVMGKFPTKYHSEIKRELASAGFSTVSNFLIK
Ga0244775_100135333	F019478	N/A	MILKIKNTDRMVGTMFWNRRFTCLQVHETDTNYRFQFDDSEVTSRYVWVEVSKIGRMDSDGDWVYSLNYMRCNQHSITAKWFENWKNVTKTFGDALKKQF
Ga0244775_100135336	F024555	GGTGG	MNVVTIIEICNMLTIKNIEKLYKLLVGNWKVGKVVTLDSSYLIQLYKHNRRETMQVNIERTPIGEGDTALYELWFWEDNSGGAKPIRRLLRKCDFELGPLYVITNIENMMDLK
Ga0244775_100135338	F007690	N/A	MLTIKNIEILGGEVLVNGWYVGRVSEGGHNDTYIFELAKHGPTERCTIMLERTGHKIFGQPGLSYFFIYNSMRTNISASADWLADKDNMIERLEYMIMNKENL
Ga0244775_100135339	F018001	N/A	MLTIKNIEYLKGQELNDWKVLDAGQDLRAQLGKNIYLLTFARLDRDGNVLDDRAGVIIDRNINPLLKGYHIKIVYEDWSYEIDTIVWPAVNIRNKDAFFGRILYKINEEYYKRN