Scaffold Ga0244775_10012977

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10012977
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7829
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (60.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004133	Metagenome / Metatranscriptome	451	Y
F024558	Metagenome / Metatranscriptome	205	Y
F033434	Metagenome / Metatranscriptome	177	Y
F035768	Metagenome / Metatranscriptome	171	Y
F039639	Metagenome / Metatranscriptome	163	Y
F039640	Metagenome / Metatranscriptome	163	Y
F065787	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1001297712	F035768	AGGA	MRITIEDRLLASYHAQQMRLRVRGDEEYRARVEKQAFEKIIVDRVSRNLRLGLNKGTNIDIEV
Ga0244775_1001297716	F039640	N/A	MNIDRLLLEATRQPGEIDILHYTNLVLQEACRLIKDTPTTSAFTTFDLAVAETQRADCFKSVYNQIVENITNATT
Ga0244775_1001297718	F033434	N/A	MLFKKQEIHSLDFSGTEGMNVEAWETWAEQMQLSHLYTWLLPQLVAWYGSWTLVKVGDTIDCLETVKHNCPDPKSRAFYMLSRIKRSLLLATQTKTPDYASLTPLILMGQKRIRGVDYEAWKSASGLQYILEPRLLSAVILEPADLEEVNSLGSDRLIEIQTQGLTTKTGKTAGSRKPAKSTWSLSGIQDTEIGHLPKLTQTILTQCWLAHPELRTPYMILDLNNWDSIPQPLISNNLFKEVVSTSTKQDSKKDMANLMPWDL
Ga0244775_1001297719	F004133	N/A	MGFMKYTKEITDKLILDYRSGVAVADIATTLDVPERSVIAKLSSLGVYTKKSYVNKRGEVPVKKSEHIERIAELLDVDEELLESLEKVNKTVLKLIENKLAASDPKLHQTRSIDHLFAEV
Ga0244775_100129773	F065787	N/A	MRKLEYYEIRENCKLIDYDLKLAGKGKLWVEVYRDDQYEYRALFPDVSDWSAMPMTILTHKLHETQTDLS
Ga0244775_100129776	F024558	AGGA	MIVILYTEDFEPIIPIDLPLWLLDRLEQEGAVRVAVNRPKGFTDVRIPVGNLDCETPTVRIRYEKLRWHDGSLKTLLVTPDEELALTLNPEWLPGQRAPIQLYLNTVRKMHEELIKQIRKNQD
Ga0244775_100129779	F039639	AGGTGG	MNIDREFIKWFYEEQYPEQGSNRRQCYGMTAGTTNINTIDYWMREAFRAGAQAATHNYEVNALEQFEAFDIKRNYPL