NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10012602

Scaffold Ga0244775_10012602


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10012602 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7980
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (25.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005010Metagenome415Y
F005132Metagenome / Metatranscriptome411Y
F006007Metagenome / Metatranscriptome384Y
F008239Metagenome / Metatranscriptome336Y
F013231Metagenome / Metatranscriptome273Y
F016811Metagenome / Metatranscriptome244Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_100126021F006007N/ANGFTPKVMATFVGRNMSNEQKAEEYAKLKQSFTGPDGETIIASWVKKIEDKPQIDVLDVQNLDKTIDVLSRLNDAKILTAHNVTSPTLFGVMVSGKLGGTGNELVSAYQIFRATETLPNREVILNGINRVLSTVDYDKMEVSIVEEEINLENIKGANTDNISNG
Ga0244775_1001260211F013231N/AMKRYDNCKLTRSHIDEILKDMASIFTNLGTDSTLAEIQEAYQKENALIDQIAELDPDKAKSIRPYVN
Ga0244775_1001260217F016811N/AMSKGQMIYDIGVRLAWKKKRGNGYTNVYLGTVDRPFQFVTRARSIDHINRSPEMIAKMMSYVGATGKSIYDFYVCEEFYRNEISESFAHKEEDYVREFGE
Ga0244775_1001260218F005010N/AMLVSFSVVFKIYLLMVSRLIRKRRHVHEVQKFLDMLMIDNVNMTLHASRFGWNDDLQHQITNSALLIRKYQRRLRLITM
Ga0244775_100126022F005132N/AMVRIIFIDDNYLYKNFPLPQRMDRASLLSIIQLEQFTSTQDLLGTCLYEDLEDKVYNQTLTSAEEGLFKLVKYSLSMYAAKSAISILRSETSRTKREESNADQYVLDTILSTIESKLAYINKRVVEYIKADTALHGIATADGCDNDVFDETDTYNSTIYYPKEPINKDCNAG
Ga0244775_1001260220F008239N/AMREILLEMYEKLWNADKDKWSWNVILKDTLEKLETKDDTER
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