Scaffold Ga0244775_10012257

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10012257
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8096
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015339	Metagenome	255	Y
F020904	Metagenome	221	Y
F049636	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100122571	F020904	N/A	IGSNFDDFLKINNIELKRDINWAIKMLDAGKMMSREGNPSLTLFPKKYDHAESTITTEDLFAEDWMVVQSKSFKDVLDDLNAGKTIRRKSWPPDWGVGKYARYGKIIYLDLIADDWEVEDVVAEVDKIQKDLRDGKA
Ga0244775_100122572	F015339	AGG	MNSDFRILDEQYVRGRIWSFTRFQKYLREIAYIFCEEFQYDKDDIVEVSLSDDGKTVWVHFDSGTIGFASELLWDKNVRETFKKNFEVD
Ga0244775_100122574	F049636	N/A	MTGKEALSKLEEGFIMRRESWDPDVKCKAYFSIFNKTVPESVPDDPAFDEYISFFDCLDNGDFLEDDWEIVDEIL