Scaffold Ga0244775

Basic Information
Taxon OID	3300024346 Open in IMG/M
Scaffold ID	Ga0244775_10012030 Open in IMG/M
Source Dataset Name	Whole water sample coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024346 Open in IMG/M

Scaffold ID

Ga0244775_10012030 Open in IMG/M

Source Dataset Name

Whole water sample coassembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8171
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (7.69%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

8171

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (7.69%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	USA: Columbia River Estuary
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Columbia River Estuary

Coordinates

Lat. (^o)

46.234

Long. (^o)

-123.9135

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012871	Metagenome / Metatranscriptome	276	N
F019140	Metagenome / Metatranscriptome	231	N
F021113	Metagenome / Metatranscriptome	220	Y
F027518	Metagenome / Metatranscriptome	194	N
F039140	Metagenome / Metatranscriptome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100120301	F012871	N/A	MENSILTLRNASTTTLSITQRVDKAERESAFVADYDLPAFVKLCSKVCAMYGIALPEAQLLQLLHEFIGKHFRWVTFEHFNLAFELNAANELTKKCEHFGALSVSFIGDVLTHYKPHRDKANLQIQREIAEAKEEQTKQLKEKEMPINDDSWRRMLAEDLHNYKKGKYTVIEIRAVSLMRWLEESKQITVDTFTEEEYRLCKANAKKNIYFEQQLVASMVDRLSDRKRQLLKESIHFEGMRELYKLYLKKQTLA
Ga0244775_100120305	F019140	N/A	MKQTPLYETLKMTYEREREIVNSIATYFQQGKILGDILLELSQRKDLNAKEKIYLALMIGSMMTKNKADGTEQN
Ga0244775_100120306	F021113	N/A	MDERKYQPDAVIVIIATSVFWLLVCLAFWNFNPKIQTEIQIQKQDSIIYYNSGEYDRLLQEEIDLYGTYRRYEDAQLNAKTTYRTRRDTILVLDTIRKTDIVYLINSCDSVIASDSLVIDNLQEQINIKDEKTNNLEEVVVAYKQKSVLLSEQINTLDADKKKLEKQKKRRNHALVFTSSVAILSTFVLSILL
Ga0244775_100120308	F039140	N/A	MKDWFNSLLSNCSKVSSKRIVAIFVVTNLIVISYIATFSQYDCPISMFDTLALLTGGLFGGTVIERFANQKTNGRTTQDNSENNS
Ga0244775_100120309	F027518	N/A	VNTENEITLIHEQLQTMDKKIDRIYNVLIGDDQMKIEGLVSKVQKHDKYISNQRLQVARLGGIATAAGVVGGLIVQLIIKLI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0244775_10012030

Overview

Ecosystem & Geography

Associated Families

Sequences