Scaffold Ga0244775_10011024

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10011024
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8584
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (86.96%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059006	Metagenome / Metatranscriptome	134	Y
F076103	Metagenome / Metatranscriptome	118	Y
F085694	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1001102410	F076103	GGAGG	MRCTINNDKWEDVNKVYFVHSLKSRPNSTGVTLNLEDEDGNISERVVAFHQIEWVEE
Ga0244775_1001102423	F085694	AGGA	MTNTNYIYTLQDLYKIFQQAEDKVAQLREFQSLNLEYKINWDNLISRHVI
Ga0244775_100110245	F059006	AGGA	MFSDDERAEIESVKGIVQKKLRELLSDLPTDTYPFFKESILTGGCFASLFLDEEVHDWDVYLRDSVTISRFESFVMSDTPTLNEVADVTSGYMTITNVDGKLVTANAITFKNGLQVIVKTNKKHREDFDFIHCMPYFDMKTQQLFISRAQYDCIKRKQLVKNPAHQQTISKHRIEKFISRKWNIGA