Scaffold Ga0244775_10009629

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10009629
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9265
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (15.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F047578	Metagenome / Metatranscriptome	149	Y
F049561	Metagenome / Metatranscriptome	146	N
F053077	Metagenome / Metatranscriptome	141	Y
F060730	Metagenome / Metatranscriptome	132	Y
F096905	Metagenome / Metatranscriptome	104	N
F098924	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000962910	F000716	N/A	MIKPMYIMEKLKKQVRNYQLRSQTVMSYEQDGYSSYQNYLYKRALYGLDALTEKELATMCSKKKQRIINVYKRAQITLNKFKQQVTIKYSNVIFETLFPNSPITQFLLADTEADEKFKNTLTFKDLGIEKQDIIAIFIAEGILPKNFFDLKDAPLALPRLKHEVKTERM
Ga0244775_1000962912	F053077	N/A	MLYQLPNGKVIYLTIEQFLELTDEDIQYLMSIDFGDHILNPFTDSAVHKNTKEHYYDFDYLVDDEGLNERPSDDEPFDDIIDLSDPSDI
Ga0244775_1000962913	F049561	AGGAGG	MTKIRLELEETDLFNAIKKIIDHPNRVEIAKTLTTIIAPNERLSSIFFKTYFGGAAPQVLPEGTMITVKPSVLSYRANVDAMKRIGLLNISGHATAIIKEFRGFHESHNYYVNFMNVDDNDKSYEDTGFIGYQDVISIIEEL
Ga0244775_1000962914	F096905	AGG	VESKIFTSVIGFNFELNLVDNDGQPVKTGARRVDCYLSSETPNVGTKIGGENWFTNFNEPLLSKIRDYRRRND
Ga0244775_1000962915	F098924	N/A	MNVLGKLFNKKKTYPKDNKFEVLIIGEDKSDFQEMLGITDKRREELLKLAFKSYKDNDLFTTSCQVAVAECTHINEVVFLMTILTKIREVESNPLSAILGSIGRGE
Ga0244775_100096293	F060730	N/A	MGRMKEVYMQIMYANDEKIPQELTIADMVRMKELEIYNWEEYEREQERIRVFRVKQENPREVAKVAQTREYWEKELQAGKIRRRIKKD
Ga0244775_100096295	F047578	GGA	MKAICIDSSNKPTKVPIEQWIKEGEVYTIIKVVKMGLQDGKYGVLLKEVQISADCFPYEYYDAERFIPLDIRLHQAEEEKEEVLEEADLELI