Scaffold Ga0244775_10009208

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10009208
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9503
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017135	Metagenome	242	N
F020172	Metagenome / Metatranscriptome	225	N
F064230	Metagenome	129	Y
F087132	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100092082	F017135	GAG	MIQIISCPLPGGGRALLKTSDIGGATTAKNPQECDVYVLGWAQEGITIDLSVEEFAEVWVSALLDEEDEPEYEIVFASDGLH
Ga0244775_100092083	F064230	AGGAGG	MRSYLPQMACTECHKIMVPQFKREYPHKLDGWSCDCGHSEKAILRERMFTRASAQNQDDRQA
Ga0244775_100092085	F020172	GGAGG	MCTTVKRAMFCTRNGYKHIPNLKQVCVLVGRLKGLTESEYLDLCATNKLENVRALEMAKHYPAH
Ga0244775_100092089	F087132	GAGG	MVAATRRHKIRSVKDEENRRALSVRGKAEYIFDLIDEIGELDPNDEQHFQAKVQQKKTQAELRLKMLAKLMPDLKAIDADLTSSDGSMTPPMVIELVAKGLD