NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10008580

Scaffold Ga0244775_10008580


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10008580 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9893
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (25.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010249Metagenome / Metatranscriptome306Y
F014793Metagenome / Metatranscriptome260Y
F014976Metagenome / Metatranscriptome258Y
F033039Metagenome / Metatranscriptome178Y
F033041Metagenome / Metatranscriptome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_1000858010F010249N/AMKALQNIQNEAKQIVIQLADRQINGMKVKYGEFQKWMAIENNPVIQQHYNGEVSVNQYDSAHKYVYMTQYKSWNRELNRYELPTYYPSDYKGQREMSYNKDLVYVVYELRLQISNNWETRYREDFVAQNMVKLNRALAKHLTDNMTASNIKVNVGGDGAEVLADVDGKLFKTFGTLCGGYVQCLHYRYRSSLK
Ga0244775_1000858017F033039AGAAGMSPHQKAAYEIIHDYYFILPNNGSLNNGLMSCGRRYKEAIDCALIGVERIILTLEFMSIESDAIFIMNRINFYDKVQTELYKIKDGDSKLDLNEWMEIFKK
Ga0244775_1000858025F014793N/AMAFENVVFWKDGFDEGEAKGGIFVRSFDLKKFLEKVEEDGTEVVGIKFEDNNMEIITKVQ
Ga0244775_1000858026F014976N/AMKKFNKISREKWNQLKRIADMYEVVGYQGGKNVNYDEVKVWCRDKWDNIRYSHVVINQNW
Ga0244775_1000858027F033041N/AMEKIKINSNYKFTFDTDVELRRAQSSGHIESYDMVRICIKRLDNGNQVDFPIKSREDYFDQVASLNERSNEYDMVEIYQDTHSYNIYDYI
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