Scaffold Ga0244775_10008510

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10008510
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9936
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (8.70%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011920	Metagenome	285	Y
F012345	Metagenome	281	Y
F024267	Metagenome / Metatranscriptome	206	Y
F030019	Metagenome	186	Y
F054451	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000851016	F011920	N/A	MDLSLKILWAKTTVWTVKERIKNVREKLEKEKPDAKDYINGGKESEEYLLETIQVINLLEDEITNLNRELNQLARRNAQLRVAYQELQDELKFKNIEL
Ga0244775_1000851021	F012345	N/A	MRFKLTYRIGLVTVQEWIFTSKGLAYWKKMDLIQTNRFNDGKFIITPTQ
Ga0244775_1000851023	F030019	N/A	MIVTEIKDFEVYKKSGHELVYLMVTLHDEGDTDTNGEILAEYEIEIYDSYSNYKITKKNYNEILTIKQTQDCDNYLETIYDQNYFEEHYVAEYNDEGTWWFI
Ga0244775_100085104	F024267	N/A	MKIEITHYGNKASYEFDNEDVELEDLVYHLEKLIWLTGYSINGRLEIVNDEQ
Ga0244775_100085106	F054451	N/A	MKQITKSVIKLSEIPQHLQQDEILQGHKVHTYAEFHIDDSEQDELTLWLLSQYPTLKRKISFLIHIDK