Scaffold Ga0244775_10008193

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10008193
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10130
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (67.65%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007525	Metagenome / Metatranscriptome	349	Y
F016662	Metagenome / Metatranscriptome	245	Y
F030094	Metagenome / Metatranscriptome	186	Y
F032881	Metagenome / Metatranscriptome	179	Y
F043404	Metagenome	156	Y
F070119	Metagenome	123	N
F071246	Metagenome	122	N
F072347	Metagenome	121	Y
F093864	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000819310	F070119	GGAGG	MNLNSYKAFDFVIPNCLEPGDIIEWEEEIYTVKKFDLLSDGFIIYAVDEMEDDVELLIPDNIVLSLMEEQ
Ga0244775_1000819312	F071246	GGA	MGKSQTESVADKIVALLADGRISQAQWRLWIPRRITENNKMIIANAKNFADGINEVIENEEIGISKELLFDYQTGKENGQ
Ga0244775_1000819313	F072347	AGGA	MDNRTKAEILVQFTQDNFNDEMYEEFFDYNDLGIPLSIAITQDMVILTDSGEQLLEETWIELCLLFGADPNGEYETIDDVTGE
Ga0244775_100081932	F043404	GGA	MIDLKDPLLIKLADDIAGLHIDTGIELEQWETAYDFVKHFYNTEEYVQIIIREKK
Ga0244775_1000819326	F032881	GGA	MSNTLELVVQELQNRIGQITSQYETQMAILKVQAHEAMKEKDEQIKELLETIESNKKEK
Ga0244775_100081933	F016662	GGAG	MTYLVAMTEVIYDEEYIIKEMLETGEYGINAHPISHEAMVEFVKDREWQIEHNLFLAKYDIPVIITIKDEDGTDLFFAENKMQEIK
Ga0244775_100081934	F030094	AGGAG	MKLRGIFEGTFESVWSMEVPQAEWDSYLEQHPDFDENDRDDIQEMWEHFKSIGCYDEIDDTVDTDVIMTGIETYNVEVEIN
Ga0244775_100081935	F093864	GGAG	MYNYNVEFVLEAMVMITHVSFDEPDLSDEFIIEEARQNILSYYKIDPEVLHLQDVIVHEV
Ga0244775_100081938	F007525	GGA	MKTLEGVTVTYAEMIPTSKQMAEFYVWQDGCESYATITYLDRTVEVERNGEMYLSIPDLVNGELSEHYQNIVKYSDHLQDIGIDDDIQLTQFIKTISNSGYQVYHMNPWWEVFSHNEDMGEVYDTFYEAVDGGIDYITDDSNWED