Scaffold Ga0244775_10007651

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10007651
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10540
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (70.37%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000919	Metagenome / Metatranscriptome	834	Y
F004255	Metagenome / Metatranscriptome	446	Y
F008943	Metagenome / Metatranscriptome	325	Y
F091921	Metagenome / Metatranscriptome	107	Y
F091953	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000765112	F091921	GGAG	MIELRIVENELGMKPDIQYRFMLFSVDASGALCPPNPDMKWSEWRTAEWVKAEEIEND
Ga0244775_1000765113	F008943	AGGAG	MKFDGFDWVFLTIPIFIIVAAAVLTYDAQQERALFQQTYNKNLECRQALKDQTVGRVNEICGDVPVIGDFVK
Ga0244775_1000765116	F000919	GAGG	MRFRDIEFRWSNCNNKYELVKWHRDNGSEKEYCYVIAFFDKGKEGYDMRTIGTRFFEHKEAWVVGKYALEFLNAIFQIEQDEEELK
Ga0244775_1000765122	F091953	GGAG	MVELLATTVISCSDAFRLVNRIGNVIGLSYQQKIDVIQVISQHVPTCPLKIVPDERPKSS
Ga0244775_100076513	F004255	GAGG	MNEKSKIFYNVWCCAYQRRGLYRGTAREHREHETVRICLDMKDVKFYQFDTEKPRYV