Scaffold Ga0244775_10007617

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10007617
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10571
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002515	Metagenome / Metatranscriptome	552	Y
F017133	Metagenome / Metatranscriptome	242	Y
F035304	Metagenome / Metatranscriptome	172	Y
F080058	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000761717	F002515	N/A	MSLLRMNNKMNTSKSPEELRRLMELRRSNAASAIKSKKDYSRKGRQTQLQMLLLNNED
Ga0244775_1000761728	F035304	N/A	MDLNTLKQYIHLNIISMEQDLENEDGADSIVPYLEGAIHVSNHYLELINE
Ga0244775_1000761732	F080058	GGAG	MIEYKIELIHEPSGAYMNFALFTEEEQDEVTLAKEIWSDMSVVVLDSIKEED
Ga0244775_100076176	F017133	GGAG	MSNSIFAKVATVSDYPRGLMNLCPCGQVVLAPALYHEGQPYWENPNKCKELFEGVK