Basic Information | |
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Taxon OID | 3300024346 Open in IMG/M |
Scaffold ID | Ga0244775_10006833 Open in IMG/M |
Source Dataset Name | Whole water sample coassembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 11296 |
Total Scaffold Genes | 22 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (68.18%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Columbia River Estuary | |||||||
Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004583 | Metagenome / Metatranscriptome | 432 | Y |
F011390 | Metagenome | 291 | Y |
F011760 | Metagenome | 287 | Y |
F024112 | Metagenome | 207 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0244775_1000683314 | F011390 | AGGAG | MKIQTTNYGLCSVKKHKYQTNGNLGLSLIDEDGCPVTYITTNIFPMAENEFCANIFNIGATLWNDIATSGLFEQTGEKVPSGYCEYPVCKLIADID |
Ga0244775_1000683316 | F011760 | N/A | MENTTTQRMVLRVRIQDVSDRSSAIEYVGQGTWFDGKPYIVTRYKSSPTNFYFFVYDSFVPEYNYFDAMNSGIGKEIWDLNPENGNHSGKTFIYSTMLDKMYDPYAVSPVLNSPCCLFEI |
Ga0244775_1000683321 | F004583 | AGGAG | MKTTRNSDRLKDILVSTRHQIVALKDIQIDLLRHDGKVANQVATQISALEEVYKHQLTLVTLAEAIEPKKPGWFSSQIKSKEDRLSAIMD |
Ga0244775_1000683322 | F024112 | AGGA | MEIKDYDKDRATVLNALYCSVRSAIEVENVHNNTRIEWIEDDFKVAKQKLEAIEAEMRVLLGDPFAEDVK |
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