Scaffold Ga0244775_10006833

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10006833
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11296
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (68.18%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004583	Metagenome / Metatranscriptome	432	Y
F011390	Metagenome	291	Y
F011760	Metagenome	287	Y
F024112	Metagenome	207	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000683314	F011390	AGGAG	MKIQTTNYGLCSVKKHKYQTNGNLGLSLIDEDGCPVTYITTNIFPMAENEFCANIFNIGATLWNDIATSGLFEQTGEKVPSGYCEYPVCKLIADID
Ga0244775_1000683316	F011760	N/A	MENTTTQRMVLRVRIQDVSDRSSAIEYVGQGTWFDGKPYIVTRYKSSPTNFYFFVYDSFVPEYNYFDAMNSGIGKEIWDLNPENGNHSGKTFIYSTMLDKMYDPYAVSPVLNSPCCLFEI
Ga0244775_1000683321	F004583	AGGAG	MKTTRNSDRLKDILVSTRHQIVALKDIQIDLLRHDGKVANQVATQISALEEVYKHQLTLVTLAEAIEPKKPGWFSSQIKSKEDRLSAIMD
Ga0244775_1000683322	F024112	AGGA	MEIKDYDKDRATVLNALYCSVRSAIEVENVHNNTRIEWIEDDFKVAKQKLEAIEAEMRVLLGDPFAEDVK