Scaffold Ga0244775_10006832

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10006832
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11297
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001733	Metagenome / Metatranscriptome	644	Y
F006623	Metagenome / Metatranscriptome	368	Y
F007170	Metagenome / Metatranscriptome	356	N
F009888	Metagenome / Metatranscriptome	311	N
F056616	Metagenome / Metatranscriptome	137	N
F062756	Metagenome / Metatranscriptome	130	Y
F066791	Metagenome	126	N
F103260	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100068321	F062756	N/A	PVVWDSLRDADQPETQPVLVVEAKAHDNDERQELLARLELLTQL
Ga0244775_1000683211	F007170	AGG	MAFEPAVIEQWIYETLSGDATLLGLLAPDNKPNGFQMGIYNTVAPQTDPVSRRPVQVPYVVFSRAGASGDDEDTLCGARVFTTPNYRITVWDTESGAMSMSRIQTIMNRIDTLLDNQTVTSTTPRLYVRRTSTDQTFTLSDGGRTDYGVTAVYRCLTQQ
Ga0244775_1000683212	F056616	AGGAG	MPFTKSFGLVGENCTVTIAFGGFQDGSPSAFTANTYTCLAKSVRTSTSVDTADVSALCDTTKKMQVTKASGSIDIELLVDGTQQADGSPIFFNKEGYYCQVVITPGSLNAKTFVGVVTATGIGIATGEAVTETATIMLGANGVTTAWTSA
Ga0244775_1000683213	F103260	GGA	MGIKAIKAVEPEVEHGILEVDLSEWAGEGAIVKFRQPKAADYFPDANELQKIRMSYAEMAPNLLVNCLIIGKCYIPDMDDPSDAAFIRVLLDLSRKNTQAFYAIYWSFIGKYIDVSVTKEVDEAKNDSAV
Ga0244775_1000683215	F066791	GGCGG	MANIHQLKVEFDVVEPRPQYGRLMAPLDGTKVDLTNSNNIWQDPATLTMMLAPLPVTAAWNTTYSGSYARFQKTDYTLTTAAKWKQMQIRASGDYYLQSLDVTERATLTTAWSNNQPAYLSLYVPGLKDTDKSIILKAGWGVGSAGSVEVWFAANGSAQVYKSGVLVGSYDRGDANIAPAVGTTASKSSRSDFISIMMIPARRRELIVATSNGTHFSHVFEDLSPALNNVIVPAAAFSWLVPSGQATVQLAKCAFETSGYVLSQIKSLRYPPPTGATFSGTFAGDPIGVGANTYTGSVVKADGTAYTPNGVIKDVRAKVALTGPGTGTFGLYTVEMLYDAAVGATYDGTVDVTQYIQSLSLAVDEDGKSTCTIGAIAKSLIDAGVQKPNVTSDRPVRIALGDGPAVYPGVVTYQDIFRGTLQPPKIEFLDRDTTASWATYVYTGTDRSGDFELAWIVESYPYDGITAGNAILDLMKIAGYDDAVTPYFGGDFPDQELPYTTNISKGQYSLAPDYGDNVKSYLDKIKQEYYATWITGWMPTASGYYYQWLNVNAASTASTMTLYQSIANATTAGVAEELRPQRVIRSLNSYNEEPECTQVTVIGQDPNTGIFIPYTQINAAAEIANTAPASRPRSWRGRPVCYQYRDPALNTLDAVTAACLMLYTRLTTGRTMIEFDATFLVYNVSNRPVWLGDVIKLMDTDGVGVLGNYRIIAIPSIEFVQENTVGSSTLFNVRRASYRAVYVSAGT
Ga0244775_100068326	F001733	GGAGG	MNSISIKRLVVVVIVAFVAAFTSVFGDGVRTSEAHDLSELGTVLALYGSKAVAAGVSAAVSSVLAFLTMPFKGTQANAMKVGK
Ga0244775_100068327	F006623	AGGTGG	MNCQNFSIEPNPQNPADYIIKGDIYDNDGVFVGDFGPDGTSMFAWWSTQDEAFQFNYALQFSQIMAQEIADGVAE
Ga0244775_100068329	F009888	GAGG	MALIFDLTEDPQQVVQVSAWVGDWHSYVVRLVDELGSPVDITTGTLGATFTNIQTGASYTFPSGSVTLTKQYSAQGILSVLNPAAYGTAADIRLTISFTVSTTVRRFGPLEIEVLAP