Scaffold Ga0244775_10006658

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10006658
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11466
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (80.95%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013531	Metagenome / Metatranscriptome	270	Y
F019114	Metagenome	231	Y
F050758	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000665812	F019114	AGGA	MKQLEARMTEARDEFHRNRRNRGFMSFWWSDPLHYVLVLEVAIANASSKSINFEAIVKLLPGSMGSRSTIATVLDDFVAREYMCKERGKDKRKRVYRICKEPMLLVNQYYTNRDFSLKAV
Ga0244775_100066584	F013531	AGGAGG	MVDNKKEQPLLSFQDKDGNPREILEKDLTDLNRPIVQQISQDLKAQEQLEPAYVEATKTVHHMETLRRCIANSVKELEDVLPPYKKPIVIEGADKVGK
Ga0244775_100066586	F050758	N/A	MITDQEKAIYYLTKAKFLVEEVSESNGDDDHILPLGANRVLTDVVDALKEEIDRASDYEEYDPG