Scaffold Ga0244775_10006474

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10006474
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11662
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028173	Metagenome / Metatranscriptome	192	Y
F045100	Metagenome / Metatranscriptome	153	Y
F077306	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100064742	F077306	GGAG	MTAFDGITSPEVTIQFLKSGSFVTVATSDVISINIRRGRTRQSERDQSGTADILLNNFSGIYDPDATSGTYVVGGVSILRDGLQMRIVATIGGVAYNLYYGFLETTRVDQGEAPSVTMTFVDGIAYIADAQAPALPAPANAETAATRVGRMLTLAGWGGSSSLNGTVGMLPTVQGRSCMALIYQAVDSIAGRFYISRNGVATLVPLADKFSRPTQLLFTDTSATNTVGYMELYTNPGTYYVVNQAVVARGDYKQYTSLYTPSSNAYGIAKTILDAPVATDSNAQNLALYESRKLAQPLTYVERIDFNALALADYGLLYPDFLATELGDQISVVRSGKQYNLVVEGMAFSIMQNNWMMSYTTSAINPYSITI
Ga0244775_100064744	F028173	GAG	MADEVIVLTGIKETIDALKEFDKDAVKRFTKVINTELAGAERDAKGLISEDPPMSGWRKADAAKGRTRGGEGWPGWNAGEIKSKITKTKVQGKVRKDYTTSAGALLNKSAAGAIFEIAGRRASGTKKMFEQSSSGQFLRTIENRFKKASRVVWRVVDSDRARIEANVNRALEQAKTDLQKHLQGERAK
Ga0244775_100064748	F045100	AGGAG	MNYIVISDVFTPKKKGESITEKELLELGLNIDALVAGEHLKTTAAIKPVEEVK