Scaffold Ga0244775_10006188

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10006188
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11989
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002260	Metagenome / Metatranscriptome	577	Y
F003807	Metagenome	467	Y
F051963	Metagenome / Metatranscriptome	143	N
F078735	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000618810	F051963	AGGAG	MALSNLPLVDKAKIVTYLREVAKIQTPIIEVSANYPSEDSTIAYGLYVDDVTENSRTVNQLAVQKCGSMYDAVDEFNILYISFQNDPQAPVILNAINNLAGNVNFFDGYTSVEYSRDVTIGNKSEIHTYTFNLTRLEFNNAIIS
Ga0244775_1000618811	F002260	AGGA	MSVPFQRISNATVADIIFYDPAAERRAAQMQIDWDTYFNVGSQEILYTLEFGWWPAYVDATTGSTLYANLPNGQLISSFNPNLLIKSDQTLIRLDTFKAVETFYSSLVSDTSNVNSVDTANYNHALERYEKEYEKALQLMNFYDLYQDAPEGPTTKLEENWTADADFFNNNRRWF
Ga0244775_100061886	F078735	N/A	MTSIMQIDSLGKRYALLPSEVLKRADSFDLFIMDAAMSFEHYHNKKSSTGKAPIPDYTVDELKAMKGK
Ga0244775_100061888	F003807	AGGA	MTQTNDVWLKSDEDKLQSLIADEAKMIPMLDNMGATIRQLKAKQQFRLALLNQVLESLTGDTKYNSKNNS