Scaffold Ga0244775_10005868

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10005868
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12365
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (20.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F002038	Metagenome / Metatranscriptome	600	Y
F002413	Metagenome / Metatranscriptome	561	Y
F003714	Metagenome / Metatranscriptome	472	Y
F005588	Metagenome / Metatranscriptome	395	Y
F006659	Metagenome / Metatranscriptome	367	Y
F010765	Metagenome / Metatranscriptome	299	Y
F015597	Metagenome	253	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000586812	F010765	N/A	MSPLSTPPSPDDMPVALRDIVFGILIGAIAWLVRYLCSPDKYSMGYILRRTATAGLASLLVGLATKGYFSSEGMAFAAAGCAGYAAPELWDALLARARALKAKSPSKE
Ga0244775_1000586816	F003714	N/A	MPNARHPYTETLTFAGRVLPLKRPMAEFAARRLQAILPQIAALNAAGKSQGDAAAALETTVTTLRHWLDITGTTWVNVKRRGPYSRNA
Ga0244775_1000586817	F005588	N/A	MTIIRPNSKPPFWWLFPWAYARTLHMSANAVKAYADRLDDLLDIQRSIIEEQAADIRLLKARVRDQDDAIIKGTAITPDAHPHD
Ga0244775_1000586818	F000957	N/A	MTDFRHLEGMRNLILEIYEVNERIMTGDICSAKAAIASTNVKKILSHYHEALHEDGAVKVSLQAYVAAGGWVGIQYSYELDGFEVAGSQVPRRV
Ga0244775_1000586821	F006659	N/A	MKKDTKLPTEYRIIADSSYIVLPDQKVARLLTPTVRNGVTYYNLFVPDYTRMSLADIEATIKAGEVTKSTTDAK
Ga0244775_1000586823	F015597	N/A	MSQPDFNPFDPISAAMGAMHGQNLLAAKDARIKQLEERLEGMREAGDAIWYCVRHAKRVDPAELIEAIEDWQEARNHA
Ga0244775_1000586825	F002038	AGAAGG	MSSPLPAGIERIARTVKGQYALLLLLDGYPYVEMTARKHADYLSDLGMWKRKTHPSLARSQVRFFTLAPNGEIKELTFNR
Ga0244775_1000586829	F002413	N/A	MTETPPPMAAPTLVLISGFARAGKDTLASGLLEWSTRPAEHINFADALKEAGNHFMDYLGLDGNFMAEDFKCENRDALVAMGRFARRLDKDVFARHFANWCPVMKHHDQVAPETVVCSDWRYINELRVCQDILWEKGWKVRTVYVSTAGIGPANDEELDSIAEIRASHSFDQEYIFKPNGRQQIMSEGRILAKSWRL