Scaffold Ga0244775_10005767

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10005767
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12486
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004670	Metagenome	428	Y
F034929	Metagenome	173	N
F071244	Metagenome	122	Y
F084244	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100057671	F034929	GGA	MLPTWGYIALRSKDKKIMVQVFTDLSTGLIEYTQVCTRAESWHLWGPPTE
Ga0244775_1000576712	F084244	GGA	MSANVGIEVLGLKEALKELNRIDPKLRREITRDFKQIVKPVITKAEALLPSGAPLSGMARSWKGKSGADIMSWMDNRVKKNLKPFTSGKQVRDSFSGYRQNLGVFGVRWAGPQATIFDMAAEGQLSENLTAKYGQPSRVIYRAYNSAYQDVNRQVTELVNKVMKQTNNAMRI
Ga0244775_1000576715	F071244	AGG	MYTIISSRIGTPGDKFEPSEDTNIEALIEGGFIKSDKTPSKSAKTEETSLGE
Ga0244775_100057673	F004670	AGGA	MSRMKDYLLEDLPLFRSTDPDTSRQVSPIRVGTHRAILLEQYYYATLGLTDEEAGARAALAGHEIKGYWKRCSDLRTIGLIQDLGIRRALLSGSQGIVCGITQKGMDMVRGWA