Basic Information | |
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Taxon OID | 3300024346 Open in IMG/M |
Scaffold ID | Ga0244775_10004968 Open in IMG/M |
Source Dataset Name | Whole water sample coassembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 13610 |
Total Scaffold Genes | 34 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (67.65%) |
Novel Protein Genes | 12 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (58.33%) |
Associated Families | 12 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Columbia River Estuary | |||||||
Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003750 | Metagenome / Metatranscriptome | 470 | Y |
F004476 | Metagenome / Metatranscriptome | 436 | Y |
F004583 | Metagenome / Metatranscriptome | 432 | Y |
F006220 | Metagenome | 378 | Y |
F007310 | Metagenome | 353 | Y |
F008552 | Metagenome | 331 | Y |
F013084 | Metagenome | 274 | Y |
F024112 | Metagenome | 207 | Y |
F033432 | Metagenome | 177 | Y |
F043399 | Metagenome | 156 | N |
F085699 | Metagenome / Metatranscriptome | 111 | N |
F095475 | Metagenome | 105 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0244775_1000496815 | F024112 | AGGA | MKIEDYDKERATVLNALYCSVRSAIQTENLHNNHRIEWIQDDFEVCRKKLEAIEAEMRVLLGDPFAEEEK |
Ga0244775_1000496818 | F095475 | GGAG | MKNKYGKQCCYCGCYVSAGEGRCWMWDETKRWYVSCEDCFQEKKEERKNQG |
Ga0244775_1000496819 | F004583 | AGGAG | MRTTRNSDRLREILVSTRQQIVSLKDIQMDILRNDSKVANQVATQISALEEVYKHQLSLVKMTEDIEPKRDGWFTGHFKTKEDRLANIMD |
Ga0244775_100049682 | F085699 | GAGG | MKPCLNVGHNGAAGVNSEKQMQNLKDVTDHVKEFFSANDDTFTLVRNVSGSMIPGGLSSFKFARAGEGIFYSNGLPVVFVTRLSSENGYDANVGKWYRKQWYYENYLRKLNPNCTHLTFIHASESAGLLNALVSGVSMVMAQDFNQHTYNTSNPGGNTIYCYDTDMQTDTWYDIQQKLIAMVKQSKPDPFK |
Ga0244775_1000496820 | F006220 | GAGG | MKKFKKFIEELVIASGTEMMRASQMRPSTFKDKSKYTRKTKHKNRQDKNSDDSFI |
Ga0244775_1000496821 | F007310 | N/A | MRTVLWNNTERWFNHHHYELLIEDVTGFDLTQNLCSESVKYMAKRLSETKYQRRFKTLYTIYENEYNALVEKFNNQAENNGKIEVER |
Ga0244775_1000496822 | F013084 | N/A | MGILSILGLMEETKNTVLSRGHDVKNWLVLGNDCYALECKDCKMTVMIKENPLPNEIKVGGEAVAVNCVKPEKKKLRK |
Ga0244775_1000496824 | F043399 | N/A | MLLDDYTMVIWTIVKKNNNYILLDSCGVEVFRRKENRKKEIYQYCEDNGIDVQEEF |
Ga0244775_1000496829 | F008552 | N/A | MIISFEASANVDTTLFGYFSMEYDPELFSDIKENLTEISKNEPLSFKLDTNDVKLLQGAFHNIRRIICIPDVEQNKFTDVLKREFDTSTFKKFKQCKLHIDKDYFYFTGNYETGNNPIEFQSLNFDTRFIESLEYKYKKHQESVVN |
Ga0244775_100049684 | F004476 | AGAAG | MLFSKNGFKSVESTEEFVKQAIEFGQKDIVLSVAHGNGVIDIVISPTMDAIEADVYHFLNDDTELKYSMPIKTLTDNNISSLALTSAIYAYLSEAFKVAEMLRSTTRQSTDYAK |
Ga0244775_100049685 | F003750 | N/A | MNEEILHRVMQVAIYSGGIVAFWQITKHMPKALYTLLECIIVMTFSVLLLTPFSMIIEYILGGNIETTMMFVGCLATVSLLSTMWMVMVQSSRELQGKKQYKYVVL |
Ga0244775_100049686 | F033432 | AGG | MSDYRKKFLSLWSSIMAEERWHSFISQACVSSCKGWNAWAPLCECGSNFCTFKPSGNAEDMILAIEVRPVEV |
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