Scaffold Ga0244775_10004968

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10004968
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13610
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (67.65%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Associated Families: 12

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003750	Metagenome / Metatranscriptome	470	Y
F004476	Metagenome / Metatranscriptome	436	Y
F004583	Metagenome / Metatranscriptome	432	Y
F006220	Metagenome	378	Y
F007310	Metagenome	353	Y
F008552	Metagenome	331	Y
F013084	Metagenome	274	Y
F024112	Metagenome	207	Y
F033432	Metagenome	177	Y
F043399	Metagenome	156	N
F085699	Metagenome / Metatranscriptome	111	N
F095475	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000496815	F024112	AGGA	MKIEDYDKERATVLNALYCSVRSAIQTENLHNNHRIEWIQDDFEVCRKKLEAIEAEMRVLLGDPFAEEEK
Ga0244775_1000496818	F095475	GGAG	MKNKYGKQCCYCGCYVSAGEGRCWMWDETKRWYVSCEDCFQEKKEERKNQG
Ga0244775_1000496819	F004583	AGGAG	MRTTRNSDRLREILVSTRQQIVSLKDIQMDILRNDSKVANQVATQISALEEVYKHQLSLVKMTEDIEPKRDGWFTGHFKTKEDRLANIMD
Ga0244775_100049682	F085699	GAGG	MKPCLNVGHNGAAGVNSEKQMQNLKDVTDHVKEFFSANDDTFTLVRNVSGSMIPGGLSSFKFARAGEGIFYSNGLPVVFVTRLSSENGYDANVGKWYRKQWYYENYLRKLNPNCTHLTFIHASESAGLLNALVSGVSMVMAQDFNQHTYNTSNPGGNTIYCYDTDMQTDTWYDIQQKLIAMVKQSKPDPFK
Ga0244775_1000496820	F006220	GAGG	MKKFKKFIEELVIASGTEMMRASQMRPSTFKDKSKYTRKTKHKNRQDKNSDDSFI
Ga0244775_1000496821	F007310	N/A	MRTVLWNNTERWFNHHHYELLIEDVTGFDLTQNLCSESVKYMAKRLSETKYQRRFKTLYTIYENEYNALVEKFNNQAENNGKIEVER
Ga0244775_1000496822	F013084	N/A	MGILSILGLMEETKNTVLSRGHDVKNWLVLGNDCYALECKDCKMTVMIKENPLPNEIKVGGEAVAVNCVKPEKKKLRK
Ga0244775_1000496824	F043399	N/A	MLLDDYTMVIWTIVKKNNNYILLDSCGVEVFRRKENRKKEIYQYCEDNGIDVQEEF
Ga0244775_1000496829	F008552	N/A	MIISFEASANVDTTLFGYFSMEYDPELFSDIKENLTEISKNEPLSFKLDTNDVKLLQGAFHNIRRIICIPDVEQNKFTDVLKREFDTSTFKKFKQCKLHIDKDYFYFTGNYETGNNPIEFQSLNFDTRFIESLEYKYKKHQESVVN
Ga0244775_100049684	F004476	AGAAG	MLFSKNGFKSVESTEEFVKQAIEFGQKDIVLSVAHGNGVIDIVISPTMDAIEADVYHFLNDDTELKYSMPIKTLTDNNISSLALTSAIYAYLSEAFKVAEMLRSTTRQSTDYAK
Ga0244775_100049685	F003750	N/A	MNEEILHRVMQVAIYSGGIVAFWQITKHMPKALYTLLECIIVMTFSVLLLTPFSMIIEYILGGNIETTMMFVGCLATVSLLSTMWMVMVQSSRELQGKKQYKYVVL
Ga0244775_100049686	F033432	AGG	MSDYRKKFLSLWSSIMAEERWHSFISQACVSSCKGWNAWAPLCECGSNFCTFKPSGNAEDMILAIEVRPVEV