Scaffold Ga0244775_10004896

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10004896
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13718
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (71.43%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Associated Families: 13

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004133	Metagenome / Metatranscriptome	451	Y
F015601	Metagenome / Metatranscriptome	253	Y
F024558	Metagenome / Metatranscriptome	205	Y
F033434	Metagenome / Metatranscriptome	177	Y
F035768	Metagenome / Metatranscriptome	171	Y
F039639	Metagenome / Metatranscriptome	163	Y
F039640	Metagenome / Metatranscriptome	163	Y
F054039	Metagenome / Metatranscriptome	140	N
F061859	Metagenome / Metatranscriptome	131	Y
F062765	Metagenome / Metatranscriptome	130	Y
F065787	Metagenome / Metatranscriptome	127	Y
F080054	Metagenome / Metatranscriptome	115	N
F081346	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000489610	F062765	N/A	MGPVSMGWYRTRGLTQKQTKTATENTMFTTIGEPFTSESITTHYSCGRIDVHNVPNEPYGDEINVPPMLSTDWALFSNWLDTVETMSVWTLADLVTAYEQHNPPITWDTHD
Ga0244775_1000489612	F035768	GGAG	MKITIEDRLLASYQAQQMRLRNREDEDYRARVEIKAFERIIIDRVQRNLRLGLDKGNNIDLEV
Ga0244775_1000489614	F081346	GGAG	MAKPDPNKPITHINPPTEVPNRVMPHKPGYNDQVVVPETEANPDKPAKPRKPRK
Ga0244775_1000489615	F061859	GGA	MTVEALLIIIGLCLGICYFVFEYQKAAIPPYQEPVKPDMVEQWKAATKADTLDNIDNWNAKVGDKIWHKEAAAELEPTPINPQATWPFPTGRQP
Ga0244775_1000489617	F039639	AGGTGG	MNIDREFVKWFYEDAYPEQGSNRRQVYSTTQNSQNINIIDYWMREAFKAGAVAATNNYEVNALEQFEAFNINRNYPL
Ga0244775_1000489620	F024558	AGGA	MIVILYTEDFEPIIPIDLPLWLLDRLEQEGAVRVAVNRPKGFTDIQIPVGNLDTETPTVRIRYEKLRWHDGTLKTLLVTPDEELALTLNPEWLPGQRAPIQLYLNTVRKMHEELIKQIRKNQD
Ga0244775_1000489623	F065787	AGG	MRKLEYYEIRKNCKLIDYDLKLAGKGKLWVEVYRDEKYEYRALFPDVADWSAVPMTILTHPIHETQTDLS
Ga0244775_1000489628	F080054	GGAG	MSTQPNYTAELEALIIDVLLPVYEQHCRQRGIASLRNEINPELLKQLKKKKTIPRLFMPKFKDNHA
Ga0244775_1000489630	F054039	GAG	MIDISPNYKRLAKILNKTRKSLTQTCHELGIDVDDIEDHVLVEVIDQCSHCNIWSQQLILDLDHNPVCPTCVRLTGL
Ga0244775_1000489633	F015601	GGAG	MAGYTKEFLVDAFMSRYVNCDHLSIEKLERLEIMANDLYDRVGRDQFRVYSCLDAEAIREYKNKFALN
Ga0244775_100048964	F004133	GGA	MKYTKEITDKLIADYRGGVTVAEIATTLDVPERSVIAKLSSLGVYTKKSYVNKRGEVPVKKSEHIERIAELLDVDEELLESLEKVNKTVLKLIEHKLAQSDPKLHYTRQTDHLFADV
Ga0244775_100048965	F033434	N/A	MLFKKQEIHSIDFTGTEGLNTEGWETWCEQMQLSHLHGWLLPQLVAWYGSWTLVYDEHSNYDCLATVKLNCSDPKSKAFYMLSRVKRSLLVPQQTKTPDYASLTPLILMGLKRMQGINYETFRTSSGLQYMLEPRLLDALVLNDGDLEEVNSLGSDRLLEIQKQGLTTKSGKTAGSMKPAKSTWSLTGIQDTEIGHLPKITQTILTQCWLAHPELRTPYMILDLNDWDTMPKPLVTNDIFKAVQTQQPTKTKELADVLPWDL
Ga0244775_100048967	F039640	N/A	MNIEDLLKQSQKTAGEIDIIQYTNLILLEACRLIKDTPTTSAFTSFDLAVAETQRADCFKQVYNQIVENIKNATT