Scaffold Ga0244775_10004876

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10004876
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13748
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (87.18%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F003422	Metagenome / Metatranscriptome	487	Y
F019325	Metagenome / Metatranscriptome	230	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000487610	F000263	GAGG	MEFTPDYNIPPHLQRMIDAGVSGLDIMHGELKNLMLIAEQELAEASAREDETEEAMDSMDRTRCEGALDTLVALYELTYQLSFAIGARNEG
Ga0244775_1000487630	F019325	AGGTGG	MTTLNETLFSTIVHDYHNGGVKSSYGLDAYTRKQILIYLLRSKGCNCINCL
Ga0244775_100048765	F003422	AGGCGG	MKNETWTKYTFVCDPDQCDTLIEVTCDNYGFPLGVMQITCPCGKKLDILSVADATINKPTTEGNPMETTTSTDNQVSPAVEYNPNQLVTYKIIHGYSDPEFATAKVTSIEWDLHNARQAQKQNGLYTSQIDSVKDIIVESYAESEDQETLRSIAEALNIELTRTVEWSATIEVSGTMDVDLLEDVDIEQEIYDNLYVDSQNGNIEIGDTEVCNAREC