Scaffold Ga0244775_10004846

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10004846
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13791
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049000	Metagenome	147	Y
F051927	Metagenome	143	N
F056616	Metagenome / Metatranscriptome	137	N
F066791	Metagenome	126	N
F103260	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100048461	F056616	AGGAG	MPFTKSFGLVGENCVVTIAFGGFQDGSPTAFTANTYTCLAKSVRISTSVDTADVSALCDTTKKMQVTKASGSIDIELLVDGTAQADGSPVFFNKEGYYCQVVVTPGALTAKTYIGIVTATGIGIASGEAVTETATIMLGANGVTTAWTSA
Ga0244775_1000484610	F049000	GGAG	MTVYADDWLEVYIPSELLDEVEYYSDGGHGYKCGSIFAMKHEETADYIMSNRDSELAKHFVEDGAVDLDNRAEVIKHIDYVNNRMGEEI
Ga0244775_1000484613	F051927	GGAG	MRRCIECGSEVIDFDKTCTACRVSEWQDQQAQAQLLRERHYALEANRDAYLGRKRAVRDSIRAGVVTAVAVMLFLALVSATRDALRYEYQTKPAALKAQGVK
Ga0244775_100048462	F103260	GGA	MGIKAIKAVAPEVEHGILEVDLSEWAGDGAVVRFRQPKAADYFPDATELQKIRMSYAEMAPNLLVNCLIIGKCYIPDMDDPSDAAFIRVLLDLSRKNTQAFYAIYWSFIGKYIDVSVTKEVDEAKNDSAV
Ga0244775_100048464	F066791	GGCGG	MANIHQLKVEFDVVEPRPQFGRLMAPLDGTKVDLTNSSNIWQDPSTLTMMLAPLPVTAAWSTTYSGSYARFQKTDYTLITAAKWKQMQIRASGDYYLQSLDVTERATLTTAFGVNQAVYLSLYVPGLKDTDKSVILKCGWGVGSAGSVEVWFAANGTAQVFKSGVVVGTYERGDSNIAPAVGTQTSKSSRSDFIGIMMIPGRRRELMVTTSDGTNFSHVFEDLDPDLQNNILPAAAFSWLVPTGQATVQLAKCNFETSGYVLSQIKALRYPPPTGATFSPTYAGDNVGFGVYTFTGSVVKADGTAYTPNGVIKDVRAKVTLTGAGTGSLGLYSTEAVYDAPVSATYDGTVDVTQYIQSLSMAVDEDGKATCTIGAIAKSLIDAGVQKPNVTSDRPVRIALGNGPAVYPAVVTYQDIFRGTLAPPKIEFLDRDTTASWATYVYTGKDRSGDFDLAWIVESYPYDGIQAGNAILDLLKIAGYDDAVSPYFGGDFPDQELPYTTNISKGQYSLAPDYGDNVQSYIDKIKQEYYATWITGWMPTASGYFYQWLNVNAASTASTMTLYQSISTATTAGVAEELRPQRVIRSLNSYNEEAECTQVTVIGQDPNTGKFIPYTQIDSAAEIAATAPASRPRNWRGRPVCYQYRDPALNSLDAVTAACLMLYTRLTTGRTMIEFDATFLVYNVSNRPVWLGDVIKLMDTDGVGVLGNYRIIAIPQIEFVQENTVGSSTLFNVRRASYRAVYVSAGT