Scaffold Ga0244775

Basic Information
Taxon OID	3300024346 Open in IMG/M
Scaffold ID	Ga0244775_10004827 Open in IMG/M
Source Dataset Name	Whole water sample coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024346 Open in IMG/M

Scaffold ID

Ga0244775_10004827 Open in IMG/M

Source Dataset Name

Whole water sample coassembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13817
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (75.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

13817

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (75.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	USA: Columbia River Estuary
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Columbia River Estuary

Coordinates

Lat. (^o)

46.234

Long. (^o)

-123.9135

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004670	Metagenome	428	Y
F005027	Metagenome / Metatranscriptome	414	Y
F013185	Metagenome	273	Y
F034929	Metagenome	173	N
F035760	Metagenome / Metatranscriptome	171	N
F043398	Metagenome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000482713	F035760	N/A	MKYTGYDKTATAKMAGTEKFVDLCSRRWSFKNLGTLVVREMRSGQGMSVHATARACDIGFPDNKDGHAAAVQAMQWFVKYYKELGIEEVHDYGGLINGTWQGWRCNRNGKPGWKKWTDSDNGGSKNGRWIHVELAPQSNSGHAEDAVALEAAWRALPKP
Ga0244775_1000482714	F004670	GAG	MTYQELPLFRATDPETSRQVSPIRVGSHRALLLEQYATATLGLTDEEAGMRAALAGHEIRGYWKRCSDLRTMGLIQDLGIRRAVSSGSQAIVCVITQAGFDMVRGLA
Ga0244775_1000482715	F034929	GGA	MLAMAQNDAEPPMIPTWGYVALRSKDKKTMVQVFTDLSTGLIVYTQVCTRAQSWHSWGPPTEVERVD
Ga0244775_1000482716	F005027	AGGA	MENSIGELIAKLMNLSNQLAIELRFKESSLVLEVVGLLHSLPTVAEQNRNAWHPSFNTSGPSKGITYISTVKQNNE
Ga0244775_100048275	F043398	AGG	MPATGLLNEAMDDLKATLTAVTGLRVVSDPTKIVPNCVYLDAPSFETVAGGGNIIRVTIPVRVIGSGPAGLPVLQNILSIVATVLGSSVVIMAGQPSMLDIGGQMFPAYDLQMAMQAQKS
Ga0244775_100048278	F013185	N/A	MSLETTAEITGLKQALSELSKLDKSARFKAAAKIKASSPAMLENARAQFPADIGVTVIHGMAPSKKGKARLAYDKTKVDKGVQIMVGGRSRGAGITPLVTLVQKDAAGALFSQAGTRNNTQFTKLLSNVFGKPQRGLWRSRAFIAEQGTADIMKAVDEVIADANRALQARTSG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0244775_10004827

Overview

Ecosystem & Geography

Associated Families

Sequences