Scaffold Ga0244775_10004759

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10004759
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13950
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (86.11%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002515	Metagenome / Metatranscriptome	552	Y
F004840	Metagenome / Metatranscriptome	421	Y
F009530	Metagenome / Metatranscriptome	316	Y
F020910	Metagenome / Metatranscriptome	221	Y
F039631	Metagenome / Metatranscriptome	163	Y
F061860	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100047591	F009530	AGGA	MTITYSIWQGSRLLSIDNIAHEIKAIDHLIASLNDSELGKKTKFSANIQKIEVGK
Ga0244775_1000475911	F004840	AGGAG	MDYEYLITCQYDYEESPHWSQRYENEFGAWENFFKFTDWGMANEYSTVNLYTPTGKCYTKVFYRDGRVQVKA
Ga0244775_1000475914	F002515	N/A	MKKSKEELRRLMELRRSNAASSVPNKKKYNRKNCQSLLLQLKKESE
Ga0244775_100047592	F039631	AGG	MNTLDKNTIKHSKFGHLNLEQRIHLAATMVANGEVVSFRGASADTYNKVQALANRIKLEREFPECPCGECD
Ga0244775_1000475921	F020910	GGTGG	MWTRYTFVCDPDECDGLLEFTARDGFGFPNGIVSMRCPCGRTMQYISVEDLPERFEEPVTSITYTEVVKINTNPYT
Ga0244775_1000475923	F061860	GGAG	MNNLSLSPRLQKLVDMGESGTDILHGELKNMMYECEKELVPLLENSNNLGSDEDYEDTVQRLYNEGYMDALSAVYQLTYELAFAINDRRAQQ