Scaffold Ga0244775_10004656

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10004656
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14149
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (75.86%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020354	Metagenome	224	Y
F028157	Metagenome	192	Y
F033428	Metagenome	177	Y
F041769	Metagenome	159	Y
F051124	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000465611	F041769	AGGAG	MTYDPDALRQMNEEAQLRISELSTALAAVTEQRDNLEDSLNAAMHELDAHKTHIIHLTSTVERLRIHIAQGVEL
Ga0244775_1000465614	F033428	N/A	MTSRDTHDINQEEHDMRKIEGGLVGERDVEVLKRRFADIDPTCQATIREIADETFGAITMNPPTARRVGIARILLEIAEQERHIDKDLVRSICTLRTGKQYKNAGLALADLSWVDAERVWSTFQDIYAGRVELQYIPVSNQFTTKEIRNVR
Ga0244775_1000465626	F020354	GGA	MFKKIGKEMFALGFTLGASAITIMTLSGPIQNWALFFTILSLALHLAGTATQGDEDDN
Ga0244775_100046568	F051124	N/A	MTKKTDPIEQYLNTTGSGWCIKYVLIAVVEDEDSDQSFYIQCMENQTAAETIGLCEAVSHIQKVKIANAWIAREQETDDDE
Ga0244775_100046569	F028157	GAG	MTIADPKFVTVLADHDNHARWITHTDVTDIMDAYRQGGVHILVTLNAEGEITIAFKPGRHWEATWSPPITLERR