NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10004460

Scaffold Ga0244775_10004460


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10004460 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14500
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033807Metagenome176Y
F077311Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_1000446012F033807N/AMYCICCKKNNVTPNPPPVSSKISTEDSPPQHEEDILWKDSKRPDGSLVNVNNEMIDNGIIHIIDAGYGSTHDGDQFVIAICDDCIKENLSDATLLYYGNYMYGSEGFIGDEIEKSKQKYRRRNSLDKLI
Ga0244775_1000446021F077311AGTAGMRFIVNSKGEYYHIIEELQCPFKEKDIYIILKDDEIMYWQKANNYYEDMMVNFEVFKTSIEELELTNYRSQVRKNKTLVFLKDTLSKMIAYKREIKINEVLDKTSKESVWLVC
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