NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10004408

Scaffold Ga0244775_10004408


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10004408 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14599
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (26.32%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001883Metagenome / Metatranscriptome622Y
F004366Metagenome / Metatranscriptome441Y
F013186Metagenome / Metatranscriptome273N
F019139Metagenome / Metatranscriptome231Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_1000440814F004366N/AMNSLQAITNKIIAFYTAHKQVFKVGTDFKEQLYNFATQNEKYPLVYIVPSGVIPTENTTEFTFDIYCYDIIQKDRANIITILSDTQQILSDLNVYFNDSTDYDFDVVGLPTFTPLNNDLLDYAAGYQMTITLTVNDWTDCAVPI
Ga0244775_1000440817F001883N/AMAYANTGDFNVLYPTRRRMATILKRILRNDIVDGEGTLVESIRINARITGFEKLEIQIVAMYYFIFLNNGAFLWNGGVITPRDYVAQFTEELYNEGITAEIYSQYTEWLTKRYPLVEAVEVLERNQKLVYTFEALDPPAGFTPGFPLDV
Ga0244775_100044086F013186AGGAMKRALDKYISSNYAEVRAYTAYFLSKMGSYIDADTVINNSYLHVVNIDGDPDKVKGYLLNTIKYQILWSTSKSHRDDKITAIEHPNTEPADDDDLVHKLREDRAYSFNKGLIEIYRNEITDKIQLIVFEAYIDKGYITSRAMAIYFGITHTSAYYLIKELKQNINKLQYRYEVEPSY
Ga0244775_100044087F019139N/AMKTKNEYLGQYITTYNGNYENTIEVTEEMANEHKYYTSIGLGYLFEESTPKVKYKGVENEKAD
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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