Scaffold Ga0244775

Basic Information
Taxon OID	3300024346 Open in IMG/M
Scaffold ID	Ga0244775_10003999 Open in IMG/M
Source Dataset Name	Whole water sample coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024346 Open in IMG/M

Scaffold ID

Ga0244775_10003999 Open in IMG/M

Source Dataset Name

Whole water sample coassembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15512
Total Scaffold Genes	41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (51.22%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

15512

Total Scaffold Genes

41 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (51.22%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	USA: Columbia River Estuary
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Columbia River Estuary

Coordinates

Lat. (^o)

46.234

Long. (^o)

-123.9135

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007921	Metagenome / Metatranscriptome	342	Y
F011394	Metagenome / Metatranscriptome	291	Y
F021988	Metagenome / Metatranscriptome	216	Y
F066776	Metagenome / Metatranscriptome	126	Y
F072349	Metagenome / Metatranscriptome	121	Y
F105192	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000399910	F007921	GAG	MIIDWLVNRIFRWDSLRKAVFDEVRMYQSIDRSMWEYEKEGPTNLTWAEGDRWYGWTYNSNAKRYYFDDIGNESLMGLWEDQWLREADAH
Ga0244775_1000399918	F021988	AGG	MSNSFKKEDGTGTTPAPNAGAAAGAVTSRETPKRYPRQGVKIDTNKHGIRRETSLVPKPPKKSGRKKV
Ga0244775_1000399933	F105192	N/A	MNIPLTEIIITLFAAAISGLLTAQIGARRSKKEKLERQADKAHDQLLLELKDLEIKLYKLEKDLNEWKDKYFEALQELIRVKAELEGTLLKLSHIEIHSNEH
Ga0244775_1000399934	F072349	AGGAGG	MDKVLCYSCNKSKNELSAKKSVLLPINLLLCKSCAENKLEPRWIVILAGRQYGSDHVKEHIAKKKYVGLDITASELLI
Ga0244775_1000399935	F011394	AGGA	MFIDKNKDHFKYGINEWTGEPNKPTFYNKEMALKIRELKKPTSTLEMDIVKYPEFLAIRLYENNFAQYDGSMRVRVIEYVEMVKNILESYGVRVELEGKPGGKNHG
Ga0244775_1000399937	F066776	AGG	LLHLTEKGVEIFIKRSRTKLQESFWNNYDLVIWKKDNGGYTDVKGMYRKDAWGKAEKISVSREGIWKLPKRYVKYFK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0244775_10003999

Overview

Ecosystem & Geography

Associated Families

Sequences