Scaffold Ga0244775_10003968

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10003968
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15592
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (15.38%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000352	Metagenome / Metatranscriptome	1247	Y
F008577	Metagenome / Metatranscriptome	331	Y
F017299	Metagenome / Metatranscriptome	241	Y
F021302	Metagenome / Metatranscriptome	219	Y
F023446	Metagenome / Metatranscriptome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000396828	F017299	N/A	MNKIEPLKITLKYYDKKISTEVDRSDLTLEELHELWIEIVRAMGYHSKTIKEFYE
Ga0244775_1000396830	F021302	N/A	MRVLIQKYKKNKRKANHVRFLENRIAFLHNEIVSASFNSEYSLNKNITVMHGNIENKAKLLKKYNRRLKILIY
Ga0244775_100039684	F000352	N/A	MRNIELTENDCTFVHYVLRMYATQTPGLDSEDKSEIREVAAKFK
Ga0244775_100039687	F023446	N/A	MSRNVEFIDKLCELMGDGFFLCDQYCQDDLFEMQDGIAKHIADSANEGLGLAKFMVTKFPNTFKTE
Ga0244775_100039689	F008577	N/A	MKLTWEETKEIANRLDEIIGNNFHDAMYDVIWERESDEEVEVSDEDIIAIKEQLKRIL