Scaffold Ga0244775_10003897

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10003897
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15745
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (25.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001883	Metagenome / Metatranscriptome	622	Y
F004451	Metagenome / Metatranscriptome	437	N
F008079	Metagenome / Metatranscriptome	339	Y
F034842	Metagenome	173	Y
F046370	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000389713	F046370	N/A	MATTIIAQPQVLMPAYNPIKYIIDNTDKNEPGFRYIFTIYPAAGSHIPANVVAQYRVLPVFSTGYGEQDISRLMQSLVTWNFTSGQVNESWYQYDIDLGYEFIDNIDYTDPLTIDGLNTNIAYTAHGFEVGDQVLIVQADGGVANPALEGLHTVIYAAANDFTVNVLWTTIGDPDINGNVSYADQRKTQVLDDELIEDQEVFNGAYSLGIYAQGSFVSADYLGTTDPSFALTSLSNPNTLYTAASITDNTFYLMCRVYSGVEYTLTYFDMNDNQLGQDSPYNPTDGLYNFQVETVTYSITEDFYVGIKANDFAGTEFKYFFSYDNRCAINEDILYYLDRMGSWQSFNFQLKTYEKGQISREMYNQHVDGQVVSNEWEYSSDAMGSRTYNINVSNTLDLNTNWMDQYNANRFQELLTSPQVFYYNGTDYRACTIDSTSFENFRQRNKNLIKQSVTIKLALNTPIND
Ga0244775_1000389716	F034842	N/A	MISYQSIVDKIVTFYDNHLQVKKVGSDFKEQMVNFATADEKYPLVYVVPSGVTPYQNVTIFNIEVYCFDIIQMDRANITTILSDTQQILQDLYLEFTFSDDYDFDIDGQPIFIPLNNDLLDYAAGWQMNLSVVIKSWTNCPIPKKIYTAYSQVIIFDEEPAQDSIAFFCNGVQWDVQTGIPSGEIGAFVAMCNGNHQGSDFTQYGTYFDNGDNRVRLEMPYHVYNTFCPGGEVTLEILAI
Ga0244775_1000389717	F001883	N/A	MAYKNTGEFNILYPTRRRMAALLKRIVRNDIVQNTGTLVESIRINAKITGFGSLEIEIIAMYYFIFLNNGVPVTSNAYGPNDGGIAPRDWVNTFTRELANAGITNEIYGQYVEWISKNYPILEVADFLEKDQRLTYTFYALDPPAGFQQGFPLYV
Ga0244775_100038978	F004451	AGGA	MRPTLDNYISAHYKEIRKYTNYFLVRMKSTISADAVINNSFLYLCNIDIEVTDPGKVKAYLLNTIKMQILWSTSLTNRQERVTATDSTMPIVMDDDTELYDKIRDDMQYQDNMAVIETYRGRITDRIKLIVFQTYFDKGYSTARSMAEYFKIPVTSAHYWIQEIKNDLKNLRDEN
Ga0244775_100038979	F008079	N/A	MKIKDEYIGAKISHKGNRITLDVNRYDYFVSIGLGYMFEEPTVSEPKVIKYKAVKGPIPTPVVDEPTVETEEDGTEAE