Scaffold Ga0244775

Basic Information
Taxon OID	3300024346 Open in IMG/M
Scaffold ID	Ga0244775_10003859 Open in IMG/M
Source Dataset Name	Whole water sample coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024346 Open in IMG/M

Scaffold ID

Ga0244775_10003859 Open in IMG/M

Source Dataset Name

Whole water sample coassembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15842
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (39.13%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

15842

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (39.13%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	USA: Columbia River Estuary
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Columbia River Estuary

Coordinates

Lat. (^o)

46.234

Long. (^o)

-123.9135

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008495	Metagenome / Metatranscriptome	332	N
F009267	Metagenome / Metatranscriptome	320	N
F011222	Metagenome / Metatranscriptome	293	N
F018136	Metagenome / Metatranscriptome	236	N
F019318	Metagenome / Metatranscriptome	230	N
F020694	Metagenome / Metatranscriptome	222	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000385916	F019318	GAG	MLASLLIATQGLMPSPTPLSIGVQGLLFISVVPPVPVNPIDLPGGGGRGREERKVTATVRGVRLVFSVANVEACAGSRIEIVGSSCFTNAGEAELSASTSTTVMGARTHSSTNRPEIRFSMSFDVIGGEEENELEVYLMAQAAMGLLDD
Ga0244775_100038592	F009267	N/A	MKKNKDNELEKDDEILRVQAMEDGPKIVNGRILRPITALTISWMQRNEVFSGTMDLVWKSAAFAYLHSEPYSAIRSVVNDRSAFINAVDSWIENNMVHHLEISAMTDAMNAAFELYNASATQSKEGSGSGN
Ga0244775_100038593	F011222	N/A	MDCNIKFFHTINLKCAVALATLGFKMNKPPVTRLVRTDGKESTEFWFEGVNAKGQDASQVYRQMTKEGDELEATDPENPLCYIRAALANRDVLVDIIRNTPRLIEIEHNGKRIAISENASDKTKQEMTRFLK
Ga0244775_100038595	F018136	N/A	MITDSTYTLTLEKALTDTFVLALQQEMQSALVVTAAENFGTMTLPACFVKCTRQRESIIDSAIFQFSVDIALIVQADDMDQMAMENLWSQVLCVSHDITGLKTKLNAVRPQYAFVFGILRDGPVSLSSNDRHFERSVTITVHAALFAS
Ga0244775_100038598	F020694	N/A	MLDIFTNDLAAMLDELPVVVTFGEATFVANRTTYRRDNSLADGGFMNTSATNITAIYSAVVQTISLGDILVIGGTRLRVTSAELSQDAVSVDFTLEDINK
Ga0244775_100038599	F008495	N/A	MAEYHGLFAMVDYCRPIYPQNDHSGFDRIINLQIWPDLHEDFCASPLGWSDYVYGLFPDGKDIDRQIVLNSPAIVTPPELRSWVLCFPTGYSQDKKIDPRDVITAAHQVANGRPVLCAGKAAHGMAEFETIEYMCAYIRDANEVVTINTSTSILSSALRKSWVHISDSPKHDFTHPNQRRIERKF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0244775_10003859

Overview

Ecosystem & Geography

Associated Families

Sequences